Browse Element(s) Details


Os.53614.1.S1_at

Description gb:AK104985.1
DB_XREF= gi:32990194
TID=Os.53614.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F12, full insert sequence.
FL= gb:AK073587.1 gb:AK104985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5193011/11Cytokinin-O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51920OsAffx.12604.1.S1_at9/112+31793780..31794667hypothetical protein
LOC_Os02g51930Os.53614.1.S1_at11/112+31800108..31801997Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51939Os.54515.1.S1_at1/112+31804623..31805352NA
LOC_Os02g51950Os.47984.1.A1_s_at11/112+31808470..31809740expressed protein
LOC_Os02g51950Os.47984.1.A1_at10/112+31808470..31809740expressed protein
LOC_Os02g51960Os.2987.3.S1_x_at4/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8980.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8272.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51970Os.7228.1.S1_at10/112+31818263..31819392Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g51980NANA2+31820544..31824002retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53614.1.S1_at--1111--5451Chr02:31801572..31801596 (25 bp)
GAACTGCCGGTACCAGTGCAACGAG
LOC_Os02g51930
Os.53614.1.S1_at--453--6391Chr02:31801614..31801638 (25 bp)
GATCGACAGCAACGTCAAGCGCGGC
LOC_Os02g51930
Os.53614.1.S1_at--49--7291Chr02:31801647..31801671 (25 bp)
GTGCCTCATCGCTGAGCTCATGGAA
LOC_Os02g51930
Os.53614.1.S1_at--230--7151Chr02:31801752..31801776 (25 bp)
GTCTCACCGCAACTTCGAAGAGCTG
LOC_Os02g51930
Os.53614.1.S1_at--845--2511Chr02:31801762..31801786 (25 bp)
AACTTCGAAGAGCTGGTCCGCCACG
LOC_Os02g51930
Os.53614.1.S1_at--255--7311Chr02:31801786..31801810 (25 bp)
GTGCTCCTGGCCAAAGAGTCGTAGC
LOC_Os02g51930
Os.53614.1.S1_at--584--1151Chr02:31801802..31801826 (25 bp)
AGTCGTAGCTCCTCGCGTATGATTT
LOC_Os02g51930
Os.53614.1.S1_at--38--6931Chr02:31801818..31801842 (25 bp)
GTATGATTTCCTTTGCGCTAGTGTC
LOC_Os02g51930
Os.53614.1.S1_at--398--7431Chr02:31801885..31801909 (25 bp)
GTGTATTTGTGGCTACTGGCCTACT
LOC_Os02g51930
Os.53614.1.S1_at--723--8431Chr02:31801902..31801926 (25 bp)
GGCCTACTGCCTATATATACTGGAT
LOC_Os02g51930
Os.53614.1.S1_at--178--8011Chr02:31801923..31801947 (25 bp)
GGATGGTGCAATATCACCCTGTTTG
LOC_Os02g51930
Target Sequence 
GAACTGCCGGTACCAGTGCAACGAGTGGGGCGTCGGCATGGAGATCGACAGCAACGTCAAGCGCGGCGCCGTCGCGTGCC
TCATCGCTGAGCTCATGGAAGGTCAGAAGGGGAAGGAGATGAGGAGGAAGGCGGAGGAGTGGAGGGAGAAGGCGATCAGG
GCGGCTAAGCCCGGCGGCTCGTCTCACCGCAACTTCGAAGAGCTGGTCCGCCACGTGCTCCTGGCCAAAGAGTCGTAGCT
CCTCGCGTATGATTTCCTTTGCGCTAGTGTCGTNGTCATGAGTGATAAGCCATGAGGTGATCAGTGTTGTATTGTGTATT
TGTGGCTACTGGCCTACTGCCTATATATACTGGATGGTGCAATATCACCCTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis