Browse Element(s) Details


Os.8494.1.S1_at

Description gb:CB632966
DB_XREF= gi:29627955
DB_XREF=OSIIEb11I15.r
CLONE=OSIIEb11I15
TID=Os.8494.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.8494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leucine-rich repeats containing protein (OSJNBb0016M10.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0580010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein
LOC_Os10g05780Os.46723.1.S1_at7/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05780OsAffx.29868.1.S1_at1/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05790Os.46488.1.S1_at11/1110+2905914..2907826expressed protein
LOC_Os10g05800Os.8494.1.S1_at10/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05800Os.8143.1.S2_at1/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05810OsAffx.8512.1.S1_at11/1110+2920104..2923951transposon protein, putative, Mutator sub-class
LOC_Os10g05820Os.21524.1.S1_at11/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.21524.2.S1_x_at8/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.46085.1.S1_x_at5/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05840Os.21524.2.S1_x_at11/1110+2934353..2935237expressed protein
LOC_Os10g05840Os.46085.1.S1_x_at4/1110+2934353..2935237expressed protein
LOC_Os10g05849NANA10+2940979..2941180NA

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8494.1.S1_at--971--3511Chr10:2909956..2909980 (25 bp)
CATGATGCTTCGCTGTGATGCGATT
LOC_Os10g05800
Os.8494.1.S1_at--985--6331Chr10:2909940..2909964 (25 bp)
GATGCGATTAGCGACGTTGGCCTAG
LOC_Os10g05800
Os.8494.1.S1_at--428--3311Chr10:2909767..2909791 (25 bp)
CACAGGGAAGTGCAGGATGATCAAT
LOC_Os10g05800
Os.8494.1.S1_at--885--711Chr10:2909744..2909768 (25 bp)
ATGATCCCATCCTTATTTCTTATTA
LOC_Os10g05800
Os.8494.1.S1_at--5--7371Chr10:2909712..2909736 (25 bp)
GTGAAATTGATGTCTTCCGGGCATA
LOC_Os10g05800
Os.8494.1.S1_at--221--7151Chr10:2909701..2909725 (25 bp)
GTCTTCCGGGCATAGCTGTGAAGGA
LOC_Os10g05800
Os.8494.1.S1_at--600--8971Chr10:2909683..2909707 (25 bp)
TGAAGGAAATCCTTTGCTCGTTTGA
LOC_Os10g05800
Os.8494.1.S1_at--115--8831NONE
TGTTGGGATGCTTCATGGAATGTGC
NONE
Os.8494.1.S1_at--332--5291Chr10:2909447..2909471 (25 bp)
GAATGTGCAAGGTCGGGACATACTA
LOC_Os10g05800
Os.8494.1.S1_at--500--3551Chr10:2909429..2909453 (25 bp)
CATACTAATGTTGTGATTTCCTAAA
LOC_Os10g05800
Os.8494.1.S1_at--528--6531Chr10:2909415..2909439 (25 bp)
GATTTCCTAAACTTTATGATCTAGC
LOC_Os10g05800
Target Sequence 
CATGATGCTTCGCTGTGATGCGATTAGCGACGTTGGCCTAGNAGATATTGCAAGAGGATGCTTGCAGCTGGAGGCGTGTG
GGGNTGTTCCGCTGCTCTCNGGTAACTCCAGCAGGCGTGGCAGCCCTAGCTGGAGGCAGCTNCAGATTGCAGAGGATCAT
TGTTGANAAGTGTAAGGTGCCAGAGGAGGCCACAGGGAAGTGCAGGATGATCAATGATCCCATCCTTATTTCTTATTATT
AAGACGTGAAATTGATGTCTTCCGGGCATAGCTGTGAAGGAAATCCTTTGCTCGTTTGAGCTTNACATACATTTAAAATG
TGAGAATATTTTAAACAATNATTTCCTGGATGATGGTTGAACTGGTGGGTTTTTATTGTTGGGATGTTTTAAGGAAACTC
TNTGCTCGTTGTAGTTTACNTACATTTAAAATGNCAGAATGTTTTTAAACAATGATTTGCTGGATGATGGTTGAATTGGT
GGGGTTTTTTTTGTTGTTGGGATGCTTCATGGAATGTGCAAGGTCGGGACATACTAATGTTGTGATTTCCTAAACTTTAT
GATCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis