Browse Element(s) Details


Os.46723.1.S1_at

Description gb:CB679458
DB_XREF= gi:29683183
DB_XREF=OSJNEf02P16.r
CLONE=OSJNEf02P16
TID=Os.46723.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transporter (OSJNBb0016M10.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g057807/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05730Os.18851.2.A1_at11/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05730Os.18851.1.A1_at10/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05740OsAffx.6586.1.S1_at11/1110+2878546..2880179hypothetical protein
LOC_Os10g05750Os.8203.1.S1_at11/1110+2881765..2883207proline-rich protein, putative, expressed
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein
LOC_Os10g05780Os.46723.1.S1_at7/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05780OsAffx.29868.1.S1_at1/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05790Os.46488.1.S1_at11/1110+2905914..2907826expressed protein
LOC_Os10g05800Os.8494.1.S1_at10/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05800Os.8143.1.S2_at1/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05810OsAffx.8512.1.S1_at11/1110+2920104..2923951transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46723.1.S1_at--880--5091Chr10:2897358..2897382 (25 bp)
GCACGTGCTGATCGGCGTCGCGGAG
LOC_Os10g05780
Os.46723.1.S1_at--176--1751Chr10:2897068..2897092 (25 bp)
ACCTTGCGCAGCGATACGACTACAA
LOC_Os10g05780
Os.46723.1.S1_at--574--2751Chr10:2897045..2897069 (25 bp)
AAGAACAAATCCAAGCCATGATCGA
LOC_Os10g05780
Os.46723.1.S1_at--10--3531Chr10:2897029..2897053 (25 bp)
CATGATCGATCGTATTCTTTTCTGA
LOC_Os10g05780
Os.46723.1.S1_at--745--6391Chr10:2897022..2897046 (25 bp)
GATCGTATTCTTTTCTGATTTTGTA
LOC_Os10g05780
Os.46723.1.S1_at--673--8831Chr10:2896840..2897031 (25 bp)
TGATTTTGTATCTTCTTATTCTAGA
NONE
Os.46723.1.S1_at--661--3712Chr10:2896987..2897010 (24 bp)
CTAGATATGAACAATGGCGTGACGT
LOC_Os10g05780
Os.46723.1.S1_at--551--5511NONE
GAACAATGGCGTGACGTTCTCATTT
NONE
Os.46723.1.S1_at--1100--2951NONE
AATGGCGTGACGTTCTCATTTAGAA
NONE
Os.46723.1.S1_at--711--7911NONE
GGCGTGACGTTCTCATTTAGAAAAA
NONE
Os.46723.1.S1_at--162--10211Chr10:2896939..2896961 (23 bp)
TATTCTTTTAATTGTATATCCCTTT
LOC_Os10g05780
Target Sequence 
GCACGTGCTGATCGGCGTCGCGGAGGTGCTCGCCGTGATCGGGCTGGAGGAGTTCTTCTNCGACCAGGTGGCCGGCGAGC
TCCACAGCGTGGGGCTCGCCGTGTCCCAGGGCGTGATGGGCGTCGGGAGCTACGCCAGCGGCGCGCTCGTGGCGGCGATC
GACTGGGCGACGGCGGCGAGGAGCGNCGGCGGAGAGAGCTGGTTCGCCGACGACCTCAACCGCGCGCACCTGGACTACTT
CTACTGGTTGCTCGCCGCGCTCGCCGCTNTGGAGGTGGCCGTGTTCGTNTACCTTGCGCAGCGATACGACTACAAGAACA
AATCCAAGCCATGATCGATCGTATTCTTTTCTGATTTTGTATCTTCTTATTCTAGATATGAACAATGGCGTGACGTTCTC
ATTTAGAAAAAATATCAAACATATTCTTTTAATTGTATATCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis