Browse Element(s) Details


OsAffx.8512.1.S1_at

Description gb:NM_194854.1
DB_XREF= gi:37531067
TID=OsAffx.8512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative mudrA protein - maize transposon MuDR (OSJNBb0016M10.12), mRNA.
PROD=putative mudrA protein - maize transposon MuDR
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0581011/11transposon protein, putative, Mutator sub-class
LOC_Os02g208909/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g031209/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05780Os.46723.1.S1_at7/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05780OsAffx.29868.1.S1_at1/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05790Os.46488.1.S1_at11/1110+2905914..2907826expressed protein
LOC_Os10g05800Os.8494.1.S1_at10/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05800Os.8143.1.S2_at1/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05810OsAffx.8512.1.S1_at11/1110+2920104..2923951transposon protein, putative, Mutator sub-class
LOC_Os10g05820Os.21524.1.S1_at11/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.21524.2.S1_x_at8/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.46085.1.S1_x_at5/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05840Os.21524.2.S1_x_at11/1110+2934353..2935237expressed protein
LOC_Os10g05840Os.46085.1.S1_x_at4/1110+2934353..2935237expressed protein
LOC_Os10g05849NANA10+2940979..2941180NA
LOC_Os10g05860Os.21524.2.S1_x_at9/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05860Os.46085.1.S1_x_at5/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05870OsAffx.20939.1.S1_at3/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.10222.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.45902.1.A1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.56372.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.50889.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.8356.1.S1_x_at1/1110+2946019..2950247hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8512.1.S1_at--873--5333Chr10:2920896..2920920 (25 bp)
GAAGTTGACTGATGGAATCCTGCCC
LOC_Os10g05810
OsAffx.8512.1.S1_at--491--8213Chr10:2920883..2920907 (25 bp)
GGAATCCTGCCCAGTGTGATTAAAC
LOC_Os10g05810
OsAffx.8512.1.S1_at--9--5673Chr10:2920802..2920826 (25 bp)
GACATGGCTGAGATCACATTGGTTG
LOC_Os10g05810
OsAffx.8512.1.S1_at--104--8253Chr10:2920756..2920780 (25 bp)
GGCACACTGTGCATTTGATCAACCA
LOC_Os10g05810
OsAffx.8512.1.S1_at--228--2513Chr10:2920543..2920755 (25 bp)
AACATGCTTCAAAGTCTGTCCACCT
LOC_Os10g05810
OsAffx.8512.1.S1_at--197--7193Chr10:2920530..2920554 (25 bp)
GTCTGTCCACCTAGACTCAAGAGGG
LOC_Os10g05810
OsAffx.8512.1.S1_at--663--9193Chr10:2920431..2920455 (25 bp)
TGCCATGGTTTTGGGCACTTTGCCA
LOC_Os10g05810
OsAffx.8512.1.S1_at--1003--8333Chr10:2920393..2920417 (25 bp)
GGCTGAAGCACCAGAAGACACTGAT
LOC_Os10g05810
OsAffx.8512.1.S1_at--652--3331Chr10:2920375..2920399 (25 bp)
CACTGATGAAGTGCCTACTGCTTTC
LOC_Os10g05810
OsAffx.8512.1.S1_at--374--9191Chr10:2920364..2920388 (25 bp)
TGCCTACTGCTTTCCCCAAGAAGAG
LOC_Os10g05810
OsAffx.8512.1.S1_at--655--5573Chr10:2920235..2920259 (25 bp)
GAAAGTTCATCAAGGCCTGCTAAGA
LOC_Os10g05810
Target Sequence 
GAAGTTGACTGATGGAATCCTGCCCAGTGTGATTAAACAGCTCAATGCAGCAACAACCAACCTGAAAGTTGTAAAGGTTG
CTAGGAGTGATGATGACATGGCTGAGATCACATTGGTTGAGAGTGACAACAATACCAGAAGGCACACTGTGCATTTGATC
AACCAAACATGCTTCAAAGTCTGTCCACCTAGACTCAAGAGGGGTGCAGGGAGGCCTAGAGTCACTAGGATCAGGGGTGC
ACTTGAACCAGGGGCAAGAAGGGTGCGATGCAGGAGATGCCATGGTTTTGGGCACTTTGCCAAGACTTGCAAAGAGGCTG
AAGCACCAGAAGACACTGATGAAGTGCCTACTGCTTTCCCCAAGAAGAGGAAGAAAACTCAAGATGAAAGTTCATCAAGG
CCTGCTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis