Browse Element(s) Details


Os.21524.1.S1_at

Description gb:AU030269
DB_XREF= gi:3763517
DB_XREF=AU030269
CLONE=E50836_2Z
TID=Os.21524.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0582011/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05790Os.46488.1.S1_at11/1110+2905914..2907826expressed protein
LOC_Os10g05800Os.8494.1.S1_at10/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05800Os.8143.1.S2_at1/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05810OsAffx.8512.1.S1_at11/1110+2920104..2923951transposon protein, putative, Mutator sub-class
LOC_Os10g05820Os.21524.1.S1_at11/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.21524.2.S1_x_at8/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.46085.1.S1_x_at5/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05840Os.21524.2.S1_x_at11/1110+2934353..2935237expressed protein
LOC_Os10g05840Os.46085.1.S1_x_at4/1110+2934353..2935237expressed protein
LOC_Os10g05849NANA10+2940979..2941180NA
LOC_Os10g05860Os.21524.2.S1_x_at9/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05860Os.46085.1.S1_x_at5/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05870OsAffx.20939.1.S1_at3/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.10222.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.45902.1.A1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.56372.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.50889.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.8356.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05880Os.21524.2.S1_x_at5/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05880Os.46085.1.S1_x_at2/1110+2951068..2951869proline-rich protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21524.1.S1_at--743--371Chr10:2926247..2926271 (25 bp)
ATCAACCCACACATGGTCTGTTTGA
LOC_Os10g05820
Os.21524.1.S1_at--1015--4351Chr10:2926241..2926265 (25 bp)
CCACACATGGTCTGTTTGATTGCAT
LOC_Os10g05820
Os.21524.1.S1_at--1084--811Chr10:2926235..2926259 (25 bp)
ATGGTCTGTTTGATTGCATGCATGG
LOC_Os10g05820
Os.21524.1.S1_at--578--4991Chr10:2926220..2926244 (25 bp)
GCATGCATGGTTAATTTTATCGTTC
LOC_Os10g05820
Os.21524.1.S1_at--633--3131Chr10:2926208..2926232 (25 bp)
AATTTTATCGTTCGGTTCTTGCGTG
LOC_Os10g05820
Os.21524.1.S1_at--636--4011Chr10:2926200..2926224 (25 bp)
CGTTCGGTTCTTGCGTGATTAATTA
LOC_Os10g05820
Os.21524.1.S1_at--452--6532Chr10:2926184..2926208 (25 bp)
GATTAATTAATTTCCAGGTCAGCTT
LOC_Os10g05820
Os.21524.1.S1_at--621--9751Chr10:2926177..2926201 (25 bp)
TAATTTCCAGGTCAGCTTGTTCGTG
LOC_Os10g05820
Os.21524.1.S1_at--124--4351Chr10:2926171..2926195 (25 bp)
CCAGGTCAGCTTGTTCGTGCAGAAT
LOC_Os10g05820
Os.21524.1.S1_at--402--7111Chr10:2926167..2926191 (25 bp)
GTCAGCTTGTTCGTGCAGAATTAAT
LOC_Os10g05820
Os.21524.1.S1_at--359--7391Chr10:2926113..2926137 (25 bp)
GTGAGAACGATCGATTTATGTGTTG
LOC_Os10g05820
Target Sequence 
ATCAACCCACACATGGTCTGTTTGATTGCATGCATGGTTAATTTTATCGTTCGGTTCTTGCGTGATTAATTAATTTCCAG
GTCAGCTTGTTCGTGCAGAATTAATAAAAGTTGTGATGTGAGGAGTGTGAGTGTGTGAGAACGATCGATTTATGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis