Browse Element(s) Details


Os.8143.1.S2_at

Description gb:AK067710.1
DB_XREF= gi:32977728
TID=Os.8143.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120G17, full insert sequence.
FL= gb:AK067710.1 gb:AK059016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3202011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g058001/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31980NANA7+19016957..19019884retrotransposon protein, putative, unclassified
LOC_Os07g31990NANA7+19025823..19028277transposon protein, putative, Mutator sub-class
LOC_Os07g32000OsAffx.19664.2.S1_at11/117+19032992..19034719hypothetical protein
LOC_Os07g32000OsAffx.19664.1.S1_at4/117+19032992..19034719hypothetical protein
LOC_Os07g32010Os.17181.1.S1_at11/117+19036155..19037919UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S1_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S2_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.24603.1.S1_x_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.12168.1.S1_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32040NANA7+19051935..19054261PCI domain containing protein
LOC_Os07g32050OsAffx.16515.1.S1_at11/117+19056349..19058158hypothetical protein
LOC_Os07g32060Os.54472.1.S1_at11/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32060OsAffx.24603.1.S1_x_at1/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32070OsAffx.28706.1.S1_at11/117+19062966..19064012hypothetical protein
LOC_Os07g32080OsAffx.16516.1.S1_x_at11/117+19066616..19067680Transcription factor TFIIB repeat family protein
LOC_Os07g32090NANA7+19068709..19071327hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8143.1.S2_at--610--10692Chr07:19045938..19045962 (25 bp)
TTGCCGACTTCCAGCATGGGCGTGA
LOC_Os07g32020
Os.8143.1.S2_at--82--311Chr07:19046025..19046049 (25 bp)
ATAGCTCACAGATTACGCGCGGGAA
LOC_Os07g32020
Os.8143.1.S2_at--1016--10691Chr07:19046072..19046096 (25 bp)
TTGCGTGCTTTCGTGAGGCTTACAG
LOC_Os07g32020
Os.8143.1.S2_at--197--931Chr07:19046087..19046111 (25 bp)
AGGCTTACAGCGTTTCTTCTTTCTT
LOC_Os07g32020
Os.8143.1.S2_at--808--8971Chr07:19046160..19046184 (25 bp)
TGAACAGACACTGATCGGCCACCGG
LOC_Os07g32020
Os.8143.1.S2_at--488--4151Chr07:19046186..19046210 (25 bp)
CGCGTCACTAATGCACTGTTTGGTT
LOC_Os07g32020
Os.8143.1.S2_at--107--8291Chr07:19046239..19046263 (25 bp)
TGGCTACTTTAAATTACTTCCTCCG
LOC_Os07g32020
Os.8143.1.S2_at--82--9852Chr07:19046253..19046277 (25 bp)
TACTTCCTCCGTCTTAAATTATAGC
LOC_Os07g32020
Os.8143.1.S2_at--248--10193Chr07:19046272..19046296 (25 bp)
TATAGCTACCTAGTACACTGTCCAG
LOC_Os07g32020
Os.8143.1.S2_at--50--2191Chr07:19046286..19046310 (25 bp)
ACACTGTCCAGATTTCTAGTACTAG
LOC_Os07g32020
Os.8143.1.S2_at--718--7831Chr07:19046310..19046334 (25 bp)
GGTAATGTCCCATCCAGATAGCTAC
LOC_Os07g32020
Target Sequence 
TTGCCGACTTCCAGCATGGGCGTGAGGTGGCCGGGGACGCAGAACGGGATCAGCACCACCGTCGCTGGGCTCGCCGTGGC
TGGAGCCATAGCTCACAGATTACGCGCGGGAAGCAGGCCGGAAACGAGATTGTGTTGCGTGCTTTCGTGAGGCTTACAGC
GTTTCTTCTTTCTTCTTTTCGCGTGCACATGGGGTGCCTCAAATGGGGATGTCTAACATGAATGAACAGACACTGATCGG
CCACCGGCCGCGTCACTAATGCACTGTTTGGTTGGTTGGTTGTCTAACATTCAAATATTCCTGGCTACTTTAAATTACTT
CCTCCGTCTTAAATTATAGCTACCTAGTACACTGTCCAGATTTCTAGTACTAGGTAATGTCCCATCCAGATAGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8143.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis