Browse Element(s) Details


OsAffx.24603.1.S1_x_at

Description tigr:9630.m03516
TID=OsAffx.24603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3681011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g319601/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g320201/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g320601/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36770OsAffx.24601.1.S1_at11/112+22168446..22172832Galactosyltransferase family protein, expressed
LOC_Os02g36780NANA2+22174302..22175150mTERF family protein, expressed
LOC_Os02g36790NANA2+22178949..22183425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36800OsAffx.22947.5.S1_x_at3/112+22187498..22193431retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g36810OsAffx.24603.1.S1_at11/112+22196829..22198433UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g36810OsAffx.24603.1.S1_x_at11/112+22196829..22198433UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g36820OsAffx.24604.1.S1_at11/112+22205122..22205859hypothetical protein
LOC_Os02g36820Os.51364.1.A1_at2/112+22205122..22205859hypothetical protein
LOC_Os02g36830NANA2+22209370..22212603UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046345biological_processabscisic acid catabolism
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24603.1.S1_x_at--1081--3931Chr02:22197834..22197858 (25 bp)
CGGTCCGTGGTGTACGTGAACTACG
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--516--2531Chr02:22197852..22197876 (25 bp)
AACTACGGGAGCATCGCCGTGATGA
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--161--3551Chr02:22197863..22197887 (25 bp)
CATCGCCGTGATGAGCAACCAGCAG
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--238--2651Chr02:22197879..22197903 (25 bp)
AACCAGCAGCTGGTGGAGTTCGCGT
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--965--4311Chr02:22197928..22197952 (25 bp)
CCTTCCTGTGGGTGATCAGGCCAGA
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--674--3411Chr02:22197949..22197973 (25 bp)
CAGACCTGGTGACCGGCAACGACGA
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--113--2014Chr07:19060276..19060296 (21 bp)
ACTCGACGCTGGAGAGCCTGTCCGG
LOC_Os07g32060
OsAffx.24603.1.S1_x_at--407--2551Chr02:22198188..22198212 (25 bp)
AACTCCCTGTACAAGCGCGCGGAGT
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--823--3771Chr02:22198362..22198386 (25 bp)
CTCGGTGGGAGCTCGTTTGGCAACC
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--714--7631Chr02:22198368..22198392 (25 bp)
GGGAGCTCGTTTGGCAACCTGGACT
LOC_Os02g36810
OsAffx.24603.1.S1_x_at--606--8511Chr02:22198379..22198403 (25 bp)
TGGCAACCTGGACTCGCTGATCAAA
LOC_Os02g36810
Target Sequence 
CGGTCCGTGGTGTACGTGAACTACGGGAGCATCGCCGTGATGAGCAACCAGCAGCTGGTGGAGTTCGCGTGGGGGCTCGC
CGGCAGCGGCTACGCCTTCCTGTGGGTGATCAGGCCAGACCTGGTGACCGGCAACGACGACGCCGCCGCCGCCGCCGCCG
CCGCTCTGCCGCCGGAGTTCATGGAGGCGACGAGGGGCAGGGGCCTCCTGGCGAGCTGGTGCCCGCAGGAGGCGGTGCTG
CGGCACGAGGCGGTGGCGCTGTTCCTGACGCACAGCGGGTGGAACTCGACGCTGGAGAGCCTGTCCGGCGGGGTGCCGAT
GCTGTCGTGGCCGTTCTTCGCCGAGCAGCCGACCAACTCCCTGTACAAGCGCGCGGAGTGGGGCGTCGCGATGGACGTCG
GCGGCGGCGGCGACGTGCGGCGGGAGGCGGTGGAGGCGAGGATACGGGAGGCGATGGGAGGGGAGAAGGGGAGAGCGATG
AGGAAGAGGGCAGCGGAGTGGAGTGAGAGCGCCGCGCGAGCAACGCGGCTCGGTGGGAGCTCGTTTGGCAACCTGGACTC
GCTGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24603.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis