Browse Element(s) Details


OsAffx.24604.1.S1_at

Description tigr:9630.m03517
TID=OsAffx.24604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3682011/11hypothetical protein
LOC_Os08g365801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36790NANA2+22178949..22183425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36800OsAffx.22947.5.S1_x_at3/112+22187498..22193431retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g36810OsAffx.24603.1.S1_at11/112+22196829..22198433UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g36810OsAffx.24603.1.S1_x_at11/112+22196829..22198433UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g36820OsAffx.24604.1.S1_at11/112+22205122..22205859hypothetical protein
LOC_Os02g36820Os.51364.1.A1_at2/112+22205122..22205859hypothetical protein
LOC_Os02g36830NANA2+22209370..22212603UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g36840Os.54475.1.S1_at11/112+22223706..22225554Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g36850OsAffx.12379.1.S1_at11/112+22228630..22229486Oxygen evolving enhancer protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24604.1.S1_at--207--3831Chr02:22205184..22205208 (25 bp)
CTGCTTGGGCAAACTACGTGGTCGC
LOC_Os02g36820
OsAffx.24604.1.S1_at--846--2391Chr02:22205194..22205218 (25 bp)
AAACTACGTGGTCGCGCTGTTGATG
LOC_Os02g36820
OsAffx.24604.1.S1_at--608--6331Chr02:22205447..22205467 (21 bp)
GATGCAGCTTGGTTATTGGCAGCAA
LOC_Os02g36820
OsAffx.24604.1.S1_at--510--10672Chr02:22205536..22205560 (25 bp)
TTCCTATTTTTCTCATCACGGCCCT
LOC_Os02g36820
OsAffx.24604.1.S1_at--72--7391Chr02:22205609..22205633 (25 bp)
GTGACCATGAACTGTGTCGCATCGG
LOC_Os02g36820
OsAffx.24604.1.S1_at--768--3371Chr02:22205644..22205668 (25 bp)
CACCACGTGGCTGAATTGAAACCTA
LOC_Os02g36820
OsAffx.24604.1.S1_at--51--8911Chr02:22205660..22205684 (25 bp)
TGAAACCTAACGACGAAGCCGCCGG
LOC_Os02g36820
OsAffx.24604.1.S1_at--279--2672Chr02:22205675..22205699 (25 bp)
AAGCCGCCGGACACGAATGCGGTGA
LOC_Os02g36820
OsAffx.24604.1.S1_at--714--611Chr02:22205691..22205715 (25 bp)
ATGCGGTGACCTTGACGAGCAGCAC
LOC_Os02g36820
OsAffx.24604.1.S1_at--949--9211Chr02:22205768..22205792 (25 bp)
TCCACACGGGCAGTGTTATCATCGT
LOC_Os02g36820
OsAffx.24604.1.S1_at--594--1111Chr02:22205779..22205803 (25 bp)
AGTGTTATCATCGTCGTACTGCCAC
LOC_Os02g36820
Target Sequence 
CTGCTTGGGCAAACTACGTGGTCGCGCTGTTGATGCAGCTTGGTTATTGGCAGCAATCGATTTGGTTGGTTGCCTTGTTG
ATCAATCGGAGAAGGAGGTGAAGGTCGCCGGCGTATCGCTATCTTTCCTATTTTTCTCATCACGGCCCTACACGGGCTCG
ACGGCGACGCCATCCGCCGCGGGCGACGTCACCGACGGTGACCATGAACTGTGTCGCATCGGGGTTGTCCGCCACCACGT
GGCTGAATTGAAACCTAACGACGAAGCCGCCGGACACGAATGCGGTGACCTTGACGAGCAGCACGAGCTCACTCTCCTTC
TCCCCCTCCGGCATCGGCCTCTCCTCGAGTCTCCTCTCCACACGGGCAGTGTTATCATCGTCGTACTGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis