Browse Element(s) Details


Os.54475.1.S1_at

Description gb:AK105275.1
DB_XREF= gi:32990484
TID=Os.54475.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-A04, full insert sequence.
FL= gb:AK105275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3684011/11Cytokinin-O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36820OsAffx.24604.1.S1_at11/112+22205122..22205859hypothetical protein
LOC_Os02g36820Os.51364.1.A1_at2/112+22205122..22205859hypothetical protein
LOC_Os02g36830NANA2+22209370..22212603UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g36840Os.54475.1.S1_at11/112+22223706..22225554Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g36850OsAffx.12379.1.S1_at11/112+22228630..22229486Oxygen evolving enhancer protein 3, putative, expressed
LOC_Os02g36860OsAffx.12380.1.S1_at11/112+22231145..22231534hypothetical protein
LOC_Os02g36870Os.11959.1.S1_at11/112+22239136..22241669expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54475.1.S1_at--417--2311Chr02:22225394..22225418 (25 bp)
AAAGGACAGGGTAATTTGATCATCA
LOC_Os02g36840
Os.54475.1.S1_at--535--6431Chr02:22225411..22225435 (25 bp)
GATCATCAAATTCAGTAGAGCGTGT
LOC_Os02g36840
Os.54475.1.S1_at--792--10031Chr02:22225426..22225450 (25 bp)
TAGAGCGTGTACTTGATTGGTGCAA
LOC_Os02g36840
Os.54475.1.S1_at--231--3231Chr02:22225448..22225472 (25 bp)
CAAGTAAAAGTATTATGCGGATGCT
LOC_Os02g36840
Os.54475.1.S1_at--1033--611Chr02:22225462..22225486 (25 bp)
ATGCGGATGCTAGTGTGCAACTGCA
LOC_Os02g36840
Os.54475.1.S1_at--610--5151Chr02:22225478..22225502 (25 bp)
GCAACTGCAGCATCAGATCCATGTA
LOC_Os02g36840
Os.54475.1.S1_at--1119--5051Chr02:22225484..22225508 (25 bp)
GCAGCATCAGATCCATGTACCACAA
LOC_Os02g36840
Os.54475.1.S1_at--985--6351Chr02:22225493..22225517 (25 bp)
GATCCATGTACCACAAATGCGTTGG
LOC_Os02g36840
Os.54475.1.S1_at--79--3031Chr02:22225508..22225532 (25 bp)
AATGCGTTGGTGATCCATGGCAGCT
LOC_Os02g36840
Os.54475.1.S1_at--889--10851Chr02:22225514..22225538 (25 bp)
TTGGTGATCCATGGCAGCTGTGCAA
LOC_Os02g36840
Os.54475.1.S1_at--615--851Chr02:22225524..22225548 (25 bp)
ATGGCAGCTGTGCAAATGTGACTTC
LOC_Os02g36840
Target Sequence 
AAAGGACAGGGTAATTTGATCATCAAATTCAGTAGAGCGTGTACTTGATTGGTGCAAGTAAAAGTATTATGCGGATGCTA
GTGTGCAACTGCAGCATCAGATCCATGTACCACAAATGCGTTGGTGATCCATGGCAGCTGTGCAAATGTGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis