Browse Element(s) Details


OsAffx.12380.1.S1_at

Description tigr:9630.m03521
TID=OsAffx.12380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3686011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36830NANA2+22209370..22212603UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g36840Os.54475.1.S1_at11/112+22223706..22225554Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g36850OsAffx.12379.1.S1_at11/112+22228630..22229486Oxygen evolving enhancer protein 3, putative, expressed
LOC_Os02g36860OsAffx.12380.1.S1_at11/112+22231145..22231534hypothetical protein
LOC_Os02g36870Os.11959.1.S1_at11/112+22239136..22241669expressed protein
LOC_Os02g36880Os.9492.1.S1_a_at11/112+22252971..22254789No apical meristem protein, expressed
LOC_Os02g36880Os.51926.1.S1_x_at1/112+22252971..22254789No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12380.1.S1_at--181--8091Chr02:22231480..22231504 (25 bp)
GGAGCGGACCCTGTGCCAGGCAGTG
LOC_Os02g36860
OsAffx.12380.1.S1_at--1131--7271Chr02:22231468..22231492 (25 bp)
GTGCCAGGCAGTGGCTGGGTTGACG
LOC_Os02g36860
OsAffx.12380.1.S1_at--584--1871Chr02:22231446..22231470 (25 bp)
ACGATGTAGGTCTGCTAAGTGCCCA
LOC_Os02g36860
OsAffx.12380.1.S1_at--485--8751Chr02:22231442..22231466 (25 bp)
TGTAGGTCTGCTAAGTGCCCAAGGA
LOC_Os02g36860
OsAffx.12380.1.S1_at--489--4291Chr02:22231334..22231358 (25 bp)
CCTCGTAGCCTGCAACGGCGGCGGG
LOC_Os02g36860
OsAffx.12380.1.S1_at--907--7671Chr02:22231293..22231317 (25 bp)
GGGTAGACACCCTCGACATGGTTGA
LOC_Os02g36860
OsAffx.12380.1.S1_at--683--5611Chr02:22231288..22231312 (25 bp)
GACACCCTCGACATGGTTGAGGTCA
LOC_Os02g36860
OsAffx.12380.1.S1_at--248--1811Chr02:22231285..22231309 (25 bp)
ACCCTCGACATGGTTGAGGTCAGAG
LOC_Os02g36860
OsAffx.12380.1.S1_at--1080--10771Chr02:22231257..22231281 (25 bp)
TTGATGGGGGCGACCAGCATCCGCA
LOC_Os02g36860
OsAffx.12380.1.S1_at--213--1692Chr11:3179871..3179890 (20 bp)
AGCCTAGCCACCCTGAGGACTTTGT
NONE
OsAffx.12380.1.S1_at--1150--9971Chr02:22231193..22231217 (25 bp)
TAGCCACCCTGAGGACTTTGTTGGG
LOC_Os02g36860
Target Sequence 
GGAGCGGACCCTGTGCCAGGCAGTGGCTGGGTTGACGATGTAGGTCTGCTAAGTGCCCAAGGAGGGCGGGGAAGGGATGA
CCCAATCACTGGGGGAGAGGAGCGGGGAATCGAAGGCGGTGCCGAGGGCGTGGTCCTGGTCGACCCCCTCGTAGCCTGCA
ACGGCGGCGGGGAGGGGAGGGCAAACGGGGTAGACACCCTCGACATGGTTGAGGTCAGAGGGGTTGATGGGGGCGACCAG
CATCCGCACGCACACATCGCGGTCGCCGATCTCTGCCGGCGGCAGCCTAGCCACCCTGAGGACTTTGTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis