Browse Element(s) Details


Os.51926.1.S1_x_at

Description gb:AK064292.1
DB_XREF= gi:32974310
TID=Os.51926.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H07, full insert sequence.
FL= gb:AK064292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0821010/11NAC-domain containing protein 2, putative, expressed
LOC_Os08g400301/11No apical meristem protein
LOC_Os03g565801/11NAC-domain containing protein 9, putative, expressed
LOC_Os02g368801/11No apical meristem protein, expressed
LOC_Os03g210301/11GRAB2 protein, putative, expressed
LOC_Os03g426301/11no apical meristem, putative, expressed
LOC_Os04g387201/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08150OsAffx.22848.3.S1_x_at4/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_at2/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_x_at1/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08160Os.11510.1.S1_s_at1/1111+4278565..4279021transposon protein, putative, unclassified
LOC_Os11g08170OsAffx.18745.1.S1_at11/1111+4281044..4281400hypothetical protein
LOC_Os11g08180OsAffx.18744.1.S1_x_at10/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08180OsAffx.18744.1.S1_at10/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08180OsAffx.14069.1.S1_at1/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08190NANA11+4284877..4287163Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08200Os.50636.1.S1_s_at11/1111+4291064..4293357Aspartic proteinase Asp1 precursor, putative, expressed
LOC_Os11g08210Os.4385.1.S1_at11/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_x_at10/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_at8/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08220Os.55322.1.S1_at11/1111+4310945..4311517expressed protein
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08240OsAffx.30875.1.S1_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08240OsAffx.30875.1.S1_x_at11/1111+4321940..4322266hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010014biological_processmeristem initiation
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010199biological_processorgan boundary specification
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51926.1.S1_x_at--303--8871Chr11:4297496..4297520 (25 bp)
TGATGTACTACCTGTGCCGCAAGTG
LOC_Os11g08210
Os.51926.1.S1_x_at--442--7391Chr11:4297446..4297470 (25 bp)
GTGATCGCCGAGGTGGACCTCTACA
LOC_Os11g08210
Os.51926.1.S1_x_at--767--5831Chr11:4297431..4297455 (25 bp)
GACCTCTACAAGTTCAACCCATGGG
LOC_Os11g08210
Os.51926.1.S1_x_at--911--7651NONE
GGGATCTCCCCGGTAAGCAAGAGTA
NONE
Os.51926.1.S1_x_at--277--1477Chr04:22776313..22776333 (21 bp)
AGAAGGAGTGGTACTTCTTCTCGCC
LOC_Os04g38720
Os.51926.1.S1_x_at--177--3271Chr11:4297027..4297051 (25 bp)
CACAACGCCCTCAGGGTTAGTATTT
LOC_Os11g08210
Os.51926.1.S1_x_at--1145--4531Chr11:4297021..4297045 (25 bp)
GCCCTCAGGGTTAGTATTTACTTCT
LOC_Os11g08210
Os.51926.1.S1_x_at--96--9751Chr11:4296994..4297018 (25 bp)
TAATTACTTACTTCTCCTAATCTAA
LOC_Os11g08210
Os.51926.1.S1_x_at--976--9491Chr11:4296982..4297006 (25 bp)
TCTCCTAATCTAATCATCTCTTGCT
LOC_Os11g08210
Os.51926.1.S1_x_at--930--451Chr11:4296967..4296991 (25 bp)
ATCTCTTGCTTTCAATCATTTCTCC
LOC_Os11g08210
Os.51926.1.S1_x_at--857--9571Chr11:4296952..4296976 (25 bp)
TCATTTCTCCTCACCAACGAATTTA
LOC_Os11g08210
Target Sequence 
TGATGTACTACCTGTGCCGCAAGTGCGGCGGCCTCCCCCTCGCCGCCCCGGTGATCGCCGAGGTGGACCTCTACAAGTTC
AACCCATGGGATCTCCCCGGTAAGCAAGAGTAAAAGCAGATCGAATCGAATCGAGGAAATTGAAGTCGAATTCAAATTCA
ATTAATTGGGGATTTGGAATTGTTGCAGAGAGGGCGATGGGAGGGGAGAAGGAGTGGTACTTCTTCTCGCCGCGGGACCG
GAAGTACCCGAACGGGCAGCGGCCGAACAGGGCGGCGGGGACGGGGTACTGGAAGGCGACGGGGGCGGACAAGCCGGTGG
GTCGCCGCGGGCGGTGGCGATCAAGAAGGCGCTCGTCTTCTACGCCGGGAAGCCGCCCAAGGGCGTCAAGACCAACTGGA
TCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCGCCGCCCGCAAGCTCTCCAAGTCCTCCCACAACGCCCTC
AGGGTTAGTATTTACTTCTTTTAATTACTTACTTCTCCTAATCTAATCATCTCTTGCTTTCAATCATTTCTCCTCACCAA
CGAATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51926.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis