Browse Element(s) Details


OsAffx.8602.1.S1_x_at

Description gb:XM_354500.1
DB_XREF= gi:35191957
GEN=OJ1339_F05.13
TID=OsAffx.8602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g082307/11retrotransposon protein, putative, unclassified
LOC_Os10g040906/11NB-ARC domain containing protein, expressed
LOC_Os03g591466/11hypothetical protein
LOC_Os02g298804/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08200Os.50636.1.S1_s_at11/1111+4291064..4293357Aspartic proteinase Asp1 precursor, putative, expressed
LOC_Os11g08210Os.4385.1.S1_at11/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_x_at10/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_at8/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08220Os.55322.1.S1_at11/1111+4310945..4311517expressed protein
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08240OsAffx.30875.1.S1_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08240OsAffx.30875.1.S1_x_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08250OsAffx.18743.1.S1_at11/1111+4323671..4324000hypothetical protein
LOC_Os11g08260OsAffx.30874.1.S1_at11/1111+4325990..4326472hypothetical protein
LOC_Os11g08270OsAffx.18742.1.S1_at9/1111+4330362..4333676hypothetical protein
LOC_Os11g08280OsAffx.30877.1.S1_at11/1111+4338379..4338717hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8602.1.S1_x_at--1011--5839Chr11:21272837..21272856 (20 bp)
GACCTCACATTGTGTAGCGCATATG
NONE
OsAffx.8602.1.S1_x_at--965--718Chr11:15929310..15929462 (25 bp)
ATGTTTGGGAGCTGGTTATATATTC
NONE
OsAffx.8602.1.S1_x_at--250--8777Chr11:15929311..15929463 (25 bp)
TGTTTGGGAGCTGGTTATATATTCT
NONE
OsAffx.8602.1.S1_x_at--331--6877Chr11:15929312..15929464 (25 bp)
GTTTGGGAGCTGGTTATATATTCTC
NONE
OsAffx.8602.1.S1_x_at--307--10259Chr11:15929313..15929465 (25 bp)
TTTGGGAGCTGGTTATATATTCTCT
NONE
OsAffx.8602.1.S1_x_at--351--3612Chr10:1162912..1162936 (25 bp)
CATTGGCTTTGTACATGGGCTATCC
NONE
OsAffx.8602.1.S1_x_at--257--5411Chr07:25908433..25908457 (25 bp)
GAAGCCTGGTTCACGGGATATGGTA
NONE
OsAffx.8602.1.S1_x_at--754--9652Chr11:4315181..4315200 (20 bp)
TCACGGGATATGGTAGTTGCGGCAT
LOC_Os11g08230
OsAffx.8602.1.S1_x_at--499--46910Chr11:21273081..21273104 (24 bp)
GCGGCATGTCAACATTTGGAGAAGA
NONE
OsAffx.8602.1.S1_x_at--460--8051Chr07:25908076..25908412 (25 bp)
GGAGAAGAGCAGCTCAGAGGTTGCT
NONE
OsAffx.8602.1.S1_x_at--896--5351Chr07:25908073..25908095 (23 bp)
GAAGAGCAGCTCAGAGGTTGCTGGA
NONE
Target Sequence 
GACCTCACATTGTGTAGCGCATATGTTTGGGAGCTGGTTATATATTCTCTTATCCATTGGCTTTGTACATGGGCTATCCT
ACAGAAGCCTGGTTCACGGGATATGGTAGTTGCGGCATGTCAACATTTGGAGAAGAGCAGCTCAGAGGTTGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8602.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis