Browse Element(s) Details


OsAffx.8602.1.S1_s_at

Description gb:XM_354500.1
DB_XREF= gi:35191957
GEN=OJ1339_F05.13
TID=OsAffx.8602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5914611/11hypothetical protein
LOC_Os11g0823011/11retrotransposon protein, putative, unclassified
LOC_Os10g0409011/11NB-ARC domain containing protein, expressed
LOC_Os02g298801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59120OsAffx.25764.3.S1_at11/113+33598501..33600888Rieske domain containing protein, expressed
LOC_Os03g59140OsAffx.22848.3.S1_x_at2/113+33606647..33611287retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59146OsAffx.8602.1.S1_s_at11/113+33619812..33624465hypothetical protein
LOC_Os03g59146OsAffx.8602.1.S1_x_at6/113+33619812..33624465hypothetical protein
LOC_Os03g59146Os.46735.1.S1_at4/113+33619812..33624465hypothetical protein
LOC_Os03g59152OsAffx.25764.4.S1_at11/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59152OsAffx.2812.1.S1_at1/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59160Os.25442.1.S1_at7/113+33627208..33631182Elongation factor P family protein, expressed
LOC_Os03g59170Os.16646.1.A1_at11/113+33632042..33635164adenosine 5'-phosphosulfate reductase 8, putative, expressed
LOC_Os03g59180Os.31151.2.S1_at11/113+33636039..33637411expressed protein
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8602.1.S1_s_at--335--36112Chr11:15929295..15929319 (25 bp)
CATTGTGTAGCGCATATGTTTGGGA
NONE
OsAffx.8602.1.S1_s_at--288--108310Chr11:15929297..15929321 (25 bp)
TTGTGTAGCGCATATGTTTGGGAGC
NONE
OsAffx.8602.1.S1_s_at--723--8679Chr11:15929298..15929322 (25 bp)
TGTGTAGCGCATATGTTTGGGAGCT
NONE
OsAffx.8602.1.S1_s_at--289--7958Chr10:10699999..10700019 (21 bp)
GGATATGGTAGTTGCGGCATGTCAA
NONE
OsAffx.8602.1.S1_s_at--11--6498Chr10:10699999..10700020 (22 bp)
GATATGGTAGTTGCGGCATGTCAAC
NONE
OsAffx.8602.1.S1_s_at--1047--8559Chr11:15929518..15929542 (25 bp)
TGGTAGTTGCGGCATGTCAACATTT
NONE
OsAffx.8602.1.S1_s_at--904--78510Chr11:15929519..15929543 (25 bp)
GGTAGTTGCGGCATGTCAACATTTG
NONE
OsAffx.8602.1.S1_s_at--272--10059Chr11:21273076..21273100 (25 bp)
TAGTTGCGGCATGTCAACATTTGGA
NONE
OsAffx.8602.1.S1_s_at--763--12310Chr11:21273077..21273101 (25 bp)
AGTTGCGGCATGTCAACATTTGGAG
NONE
OsAffx.8602.1.S1_s_at--559--107110Chr11:21273079..21273103 (25 bp)
TTGCGGCATGTCAACATTTGGAGAA
NONE
OsAffx.8602.1.S1_s_at--769--91310Chr11:21273080..21273104 (25 bp)
TGCGGCATGTCAACATTTGGAGAAG
NONE
Target Sequence 
CATTGTGTAGCGCATATGTTTGGGAGCTGGTTATATATTCTCTTATCCATTGGCTTTGTACATGGGCTATCCTACAGAAG
CCTGGTTCACGGGATATGGTAGTTGCGGCATGTCAACATTTGGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8602.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis