Browse Element(s) Details


OsAffx.25764.3.S1_at

Description tigr:9631.m05819
TID=OsAffx.25764.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative iron-sulfur cluster-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5912011/11Rieske domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59080Os.22872.1.S1_at11/113+33570865..33575781acyl-activating enzyme 18, putative, expressed
LOC_Os03g59090Os.47706.1.S1_at11/113+33577546..33580082cell death suppressor protein Lls1 homolog, putative, expressed
LOC_Os03g59100OsAffx.25764.2.S1_at11/113+33584044..33586453Rieske domain containing protein, expressed
LOC_Os03g59110OsAffx.25764.1.S1_at11/113+33588284..33592689Rieske domain containing protein, expressed
LOC_Os03g59120OsAffx.25764.3.S1_at11/113+33598501..33600888Rieske domain containing protein, expressed
LOC_Os03g59140OsAffx.22848.3.S1_x_at2/113+33606647..33611287retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59146OsAffx.8602.1.S1_s_at11/113+33619812..33624465hypothetical protein
LOC_Os03g59146OsAffx.8602.1.S1_x_at6/113+33619812..33624465hypothetical protein
LOC_Os03g59146Os.46735.1.S1_at4/113+33619812..33624465hypothetical protein
LOC_Os03g59152OsAffx.25764.4.S1_at11/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59152OsAffx.2812.1.S1_at1/113+33624739..33626671lethal leaf spot 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015996biological_processchlorophyll catabolism
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25764.3.S1_at--772--7771Chr03:33600033..33600057 (25 bp)
GGTCATCTGGGCGAACGGGTATAAT
LOC_Os03g59120
OsAffx.25764.3.S1_at--487--10171Chr03:33600052..33600076 (25 bp)
TATAATCTTGATGGCTGGTTCGACA
LOC_Os03g59120
OsAffx.25764.3.S1_at--203--4371Chr03:33600085..33600109 (25 bp)
CCACGTTGGTGGTTGCATATTAAGA
LOC_Os03g59120
OsAffx.25764.3.S1_at--197--10491Chr03:33600104..33600128 (25 bp)
TTAAGACGAACCAAGTCCTGGATTC
LOC_Os03g59120
OsAffx.25764.3.S1_at--287--2851Chr03:33600116..33600140 (25 bp)
AAGTCCTGGATTCAGACTCGTCTGT
LOC_Os03g59120
OsAffx.25764.3.S1_at--866--5711Chr03:33600130..33600154 (25 bp)
GACTCGTCTGTCCTTCATATTGAGG
LOC_Os03g59120
OsAffx.25764.3.S1_at--924--3131Chr03:33600280..33600304 (25 bp)
AATTACGCCGCGTTTGGCCTTGATA
LOC_Os03g59120
OsAffx.25764.3.S1_at--133--351Chr03:33600311..33600335 (25 bp)
ATAAAGCATGCTACGTGCCCACATC
LOC_Os03g59120
OsAffx.25764.3.S1_at--738--391Chr03:33600389..33600413 (25 bp)
ATCAGGTTGGCTGGTTAACCCCAAT
LOC_Os03g59120
OsAffx.25764.3.S1_at--41--4371Chr03:33600427..33600451 (25 bp)
CCACCAGCTTCTACCAGAGTTGAGG
LOC_Os03g59120
OsAffx.25764.3.S1_at--148--7811Chr03:33600450..33600642 (25 bp)
GGTCTACGAGAGGTACTGGTCGCAT
LOC_Os03g59120
Target Sequence 
GGTCATCTGGGCGAACGGGTATAATCTTGATGGCTGGTTCGACAAGATGATACCACGTTGGTGGTTGCATATTAAGACGA
ACCAAGTCCTGGATTCAGACTCGTCTGTCCTTCATATTGAGGAGCGTAATTACGCCGCGTTTGGCCTTGATAACTGGCAT
AAAGCATGCTACGTGCCCACATCATCTGACAACTTGATCATCGCCTTCAGAAACTGGTTCAAGAAGTACTGTAACAATCA
GGTTGGCTGGTTAACCCCAATGGTTAATCAGCTGCCACCAGCTTCTACCAGAGTTGAGGTCTACGAGAGGTACTGGTCGC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25764.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis