Browse Element(s) Details


OsAffx.25764.1.S1_at

Description tigr:9631.m05818
TID=OsAffx.25764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative iron-sulfur cluster-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5911011/11Rieske domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59060Os.9183.1.S1_at11/113+33560904..33565466Serine/threonine protein phosphatase PP2A catalytic subunit, putative, expressed
LOC_Os03g59070Os.22413.1.S1_at10/113+33566308..33569219phosphatidic acid phosphatase family protein, putative, expressed
LOC_Os03g59080Os.22872.1.S1_at11/113+33570865..33575781acyl-activating enzyme 18, putative, expressed
LOC_Os03g59090Os.47706.1.S1_at11/113+33577546..33580082cell death suppressor protein Lls1 homolog, putative, expressed
LOC_Os03g59100OsAffx.25764.2.S1_at11/113+33584044..33586453Rieske domain containing protein, expressed
LOC_Os03g59110OsAffx.25764.1.S1_at11/113+33588284..33592689Rieske domain containing protein, expressed
LOC_Os03g59120OsAffx.25764.3.S1_at11/113+33598501..33600888Rieske domain containing protein, expressed
LOC_Os03g59140OsAffx.22848.3.S1_x_at2/113+33606647..33611287retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015995biological_processchlorophyll biosynthesis
GO:0015996biological_processchlorophyll catabolism
GO:0009507cellular_componentchloroplast
GO:0009055molecular_functionelectron carrier activity
GO:0016630molecular_functionprotochlorophyllide reductase activity
GO:0046407molecular_functionchlorophyll a oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25764.1.S1_at--842--1511Chr03:33591409..33591433 (25 bp)
AGCAGGTTGATATGGGCGTTCCCGC
LOC_Os03g59110
OsAffx.25764.1.S1_at--1056--4631Chr03:33591424..33591448 (25 bp)
GCGTTCCCGCGGAATGTTGATGCGT
LOC_Os03g59110
OsAffx.25764.1.S1_at--595--5271Chr03:33591435..33591459 (25 bp)
GAATGTTGATGCGTGGCTCGACAAT
LOC_Os03g59110
OsAffx.25764.1.S1_at--1005--8311Chr03:33591449..33591473 (25 bp)
GGCTCGACAATATAATACCACGGTG
LOC_Os03g59110
OsAffx.25764.1.S1_at--259--1711Chr03:33591465..33591489 (25 bp)
ACCACGGTGGTTGTACCACATTGTG
LOC_Os03g59110
OsAffx.25764.1.S1_at--511--6971Chr03:33591477..33591501 (25 bp)
GTACCACATTGTGACGAACATCGTC
LOC_Os03g59110
OsAffx.25764.1.S1_at--624--511Chr03:33591496..33591520 (25 bp)
ATCGTCTTGGATTCAGATTCCTACC
LOC_Os03g59110
OsAffx.25764.1.S1_at--973--71Chr03:33591512..33591535 (24 bp)
ATTCCTACCTCCTCCATATTGAGGA
LOC_Os03g59110
OsAffx.25764.1.S1_at--868--2511Chr03:33592126..33592150 (25 bp)
AACTTCGCCACGGTTGGCCTTGATA
LOC_Os03g59110
OsAffx.25764.1.S1_at--806--9971Chr03:33592559..33592583 (25 bp)
TAGCACCGTCGGTTGTCCGGCGAGC
LOC_Os03g59110
OsAffx.25764.1.S1_at--1036--3911Chr03:33592626..33592650 (25 bp)
CTGGCTCGCGAGCTTCATTGAGAAG
LOC_Os03g59110
Target Sequence 
AGCAGGTTGATATGGGCGTTCCCGCGGAATGTTGATGCGTGGCTCGACAATATAATACCACGGTGGTTGTACCACATTGT
GACGAACATCGTCTTGGATTCAGATTCCTACCTCCTCCATATTGAGGAGCGCAACTTCGCCACGGTTGGCCTTGATAACT
GGCACAAAGCTTGTTATGTGCCCACATCATCTGACAACATGGTCATCACCTTCAGAAACTGGTTCAGAAAGTACTGTAAG
CATCAGATCGGCTGGGCAACCCCAATGGCTAATCAGCTGCCACCAACTCCTACCAAAGATCAGGTCTTGGAGAGGTACAG
GTCGCATGTCATGCAGTGCACGAGCTGCAGCGCTGCACTGAAGAAGATGAAGGCGCTGGAGGTCGCCCTGCAGGTGGCGT
CGGTCGCCATCGTCGGATTCCTCGCCGTCGCCAAGGGGAGTCTAGCACCGTCGGTTGTCCGGCGAGCCGCCGCCGTGTCT
ACCGCCGTGCTGTGCTTCGCCGCCTCCCGCTGGCTCGCGAGCTTCATTGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis