Browse Element(s) Details


Os.22872.1.S1_at

Description gb:AK067857.1
DB_XREF= gi:32977875
TID=Os.22872.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121L24, full insert sequence.
FL= gb:AK067857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5908011/11acyl-activating enzyme 18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59040Os.3409.1.S1_at11/113+33544237..33551375Squalene synthetase, putative, expressed
LOC_Os03g59050Os.12218.1.S1_at11/113+33551445..33556713ATP-dependent RNA helicase An3, putative, expressed
LOC_Os03g59060Os.9183.1.S1_at11/113+33560904..33565466Serine/threonine protein phosphatase PP2A catalytic subunit, putative, expressed
LOC_Os03g59070Os.22413.1.S1_at10/113+33566308..33569219phosphatidic acid phosphatase family protein, putative, expressed
LOC_Os03g59080Os.22872.1.S1_at11/113+33570865..33575781acyl-activating enzyme 18, putative, expressed
LOC_Os03g59090Os.47706.1.S1_at11/113+33577546..33580082cell death suppressor protein Lls1 homolog, putative, expressed
LOC_Os03g59100OsAffx.25764.2.S1_at11/113+33584044..33586453Rieske domain containing protein, expressed
LOC_Os03g59110OsAffx.25764.1.S1_at11/113+33588284..33592689Rieske domain containing protein, expressed
LOC_Os03g59120OsAffx.25764.3.S1_at11/113+33598501..33600888Rieske domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016874molecular_functionligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22872.1.S1_at--140--6491Chr03:33571539..33571563 (25 bp)
GATAGATCACCACCATGTGATGCAA
LOC_Os03g59080
Os.22872.1.S1_at--346--5951Chr03:33571504..33571528 (25 bp)
GAGCAAATTTCAGAGAGCCATCCAA
LOC_Os03g59080
Os.22872.1.S1_at--141--2271Chr03:33571371..33571495 (25 bp)
AAATCCTCTTTTCAAGGTGAGCTAT
LOC_Os03g59080
Os.22872.1.S1_at--904--3251Chr03:33571344..33571368 (25 bp)
CAAAATAGTTCCTGAGTTCCCAAGA
LOC_Os03g59080
Os.22872.1.S1_at--936--1431Chr03:33571269..33571293 (25 bp)
AGAACTCTCGAATCGCAGCAAGCTA
LOC_Os03g59080
Os.22872.1.S1_at--810--5051Chr03:33571255..33571279 (25 bp)
GCAGCAAGCTATGACCGACGTGACA
LOC_Os03g59080
Os.22872.1.S1_at--347--6131Chr03:33571148..33571172 (25 bp)
GAGGGTAATTCAAAATCGCTTCAAA
LOC_Os03g59080
Os.22872.1.S1_at--790--2411Chr03:33571126..33571150 (25 bp)
AAAAATGCCCTCTTGCTTGTCAAAT
LOC_Os03g59080
Os.22872.1.S1_at--190--5931Chr03:33570972..33570996 (25 bp)
GAGCATGTTCAATAGGCAACGGCTT
LOC_Os03g59080
Os.22872.1.S1_at--461--5531Chr03:33570947..33570971 (25 bp)
GAAAAAGTGACATTTCCCGATGGGA
LOC_Os03g59080
Os.22872.1.S1_at--152--9651Chr03:33570908..33570932 (25 bp)
TCAGAATACTCATCGCTGTACTGTA
LOC_Os03g59080
Target Sequence 
GATAGATCACCACCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAAAAGAACTTAAATCCTCTTTT
CAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATC
AGCTGAGCAAAGAACTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGACCACAACAACAACAACAA
TAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATACGAACAGTGAGGGTAATTCAAAATCGCTTCAAAAATG
CCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGTGTCAAAAAAAAAACAGCCNCTTGAATAAAGAGTCATGATT
CATTGGGGGCGTATAGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAAT
AGGCAACGGCTTGAAAAAGTGACATTTCCCGATGGGAATTTGTAGAGAACTTCAGAATACTCATCGCTGTACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis