Browse Element(s) Details


Os.12218.1.S1_at

Description gb:AK066048.1
DB_XREF= gi:32976066
TID=Os.12218.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12218 (NCBI UniGene Cluster)
UG_TITLE=MRNA for DEAD box RNA helicase OsPL10a, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048C24, full insert sequence.
FL= gb:AK066048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5905011/11ATP-dependent RNA helicase An3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58990OsAffx.13545.1.S1_at11/113+33527651..33528340Cupin family protein
LOC_Os03g59010OsAffx.13545.1.S1_at2/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59010Os.2219.1.S1_at1/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59020Os.20293.1.S1_at10/113+33531696..33537008T-complex protein 1, theta subunit, putative, expressed
LOC_Os03g59030OsAffx.25762.1.S1_x_at11/113+33537989..33539777Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os03g59040Os.3409.1.S1_at11/113+33544237..33551375Squalene synthetase, putative, expressed
LOC_Os03g59050Os.12218.1.S1_at11/113+33551445..33556713ATP-dependent RNA helicase An3, putative, expressed
LOC_Os03g59060Os.9183.1.S1_at11/113+33560904..33565466Serine/threonine protein phosphatase PP2A catalytic subunit, putative, expressed
LOC_Os03g59070Os.22413.1.S1_at10/113+33566308..33569219phosphatidic acid phosphatase family protein, putative, expressed
LOC_Os03g59080Os.22872.1.S1_at11/113+33570865..33575781acyl-activating enzyme 18, putative, expressed
LOC_Os03g59090Os.47706.1.S1_at11/113+33577546..33580082cell death suppressor protein Lls1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12218.1.S1_at--729--2951Chr03:33551978..33552002 (25 bp)
AATGGCTTGAACGATACTCGGCCCG
LOC_Os03g59050
Os.12218.1.S1_at--576--7731Chr03:33551778..33551802 (25 bp)
GGTGGTCAAGGCTCAACTAGTTCGT
LOC_Os03g59050
Os.12218.1.S1_at--696--8331Chr03:33551734..33551758 (25 bp)
GGCTGTCGCGAGCAACGATCATATT
LOC_Os03g59050
Os.12218.1.S1_at--592--811Chr03:33551652..33551676 (25 bp)
ATGGTGCTGGAAAATGCGCCCGTTT
LOC_Os03g59050
Os.12218.1.S1_at--234--4571Chr03:33551637..33551661 (25 bp)
GCGCCCGTTTACCTTCAATTTATGG
LOC_Os03g59050
Os.12218.1.S1_at--833--831Chr03:33551616..33551640 (25 bp)
ATGGATGGTTGTTACTGCACTGGCT
LOC_Os03g59050
Os.12218.1.S1_at--432--3911Chr03:33551597..33551621 (25 bp)
CTGGCTTTCTCGTTTACTGGCAATA
LOC_Os03g59050
Os.12218.1.S1_at--299--3192Chr12:24524464..24524507 (24 bp)
CAATAGTCTTGGTTGGCTGATTCAC
NONE
Os.12218.1.S1_at--231--6571Chr03:33551559..33551583 (25 bp)
GATTCACCTGTCCTTTTCAGTTGAT
LOC_Os03g59050
Os.12218.1.S1_at--1099--3431Chr03:33551542..33551566 (25 bp)
CAGTTGATTGTTTCGCGTAGTTTAC
LOC_Os03g59050
Os.12218.1.S1_at--91--6031Chr03:33551525..33551549 (25 bp)
TAGTTTACTAGTTTCGGACGAGGCA
LOC_Os03g59050
Target Sequence 
AATGGCTTGAACGATACTCGGCCCGTTCTTCGTTCGGAGGTGGTGGTGGCAGAAACCGCCGATCAGGCGGTGCCCGTTTT
GGTGGCCGTGACTTCCGCCGCGACAATAGGGGTGGAGGCGGCGGCGGTTATGGTGGTGGCGGTGGTGGCTATGGAGGCGG
CGGTTATGGAGGGGGCGGTGGATATGGCGGTGGCTATGGTGGTGGTCAAGGCTCAACTAGTTCGTGGGACTGATACTGAT
TCCCGGCTGTCGCGAGCAACGATCATATTCTATTGATTTCCCTGAAAACATCTGATGTGTTGGGATTTGTAATCAGCCTG
GTTGGCATGGTGCTGGAAAATGCGCCCGTTTACCTTCAATTTATGGATGGTTGTTACTGCACTGGCTTTCTCGTTTACTG
GCAATAGTCTTGGTTGGCTGATTCACCTGTCCTTTTCAGTTGATTGTTTCGCGTAGTTTACTAGTTTCGGACGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis