Browse Element(s) Details


OsAffx.25762.1.S1_x_at

Description tigr:9631.m05810
TID=OsAffx.25762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative UDP-glucoronosyl and UDP-glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5903011/11Glycosyltransferase family 28 N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58960Os.15684.1.S1_at11/113+33509487..33515062DHHC zinc finger domain containing protein, expressed
LOC_Os03g58970Os.46759.1.S1_at11/113+33518427..33524163expressed protein
LOC_Os03g58970Os.19308.1.S1_x_at11/113+33518427..33524163expressed protein
LOC_Os03g58980Os.2219.1.S1_at11/113+33525399..33526254Germin-like protein subfamily T member 1 precursor, putative, expressed
LOC_Os03g58990OsAffx.13545.1.S1_at11/113+33527651..33528340Cupin family protein
LOC_Os03g59010OsAffx.13545.1.S1_at2/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59010Os.2219.1.S1_at1/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59020Os.20293.1.S1_at10/113+33531696..33537008T-complex protein 1, theta subunit, putative, expressed
LOC_Os03g59030OsAffx.25762.1.S1_x_at11/113+33537989..33539777Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os03g59040Os.3409.1.S1_at11/113+33544237..33551375Squalene synthetase, putative, expressed
LOC_Os03g59050Os.12218.1.S1_at11/113+33551445..33556713ATP-dependent RNA helicase An3, putative, expressed
LOC_Os03g59060Os.9183.1.S1_at11/113+33560904..33565466Serine/threonine protein phosphatase PP2A catalytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25762.1.S1_x_at--781--8931Chr03:33538768..33538788 (21 bp)
TGACGGCAAAGAACCTGCAGGAGCT
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--78--1451Chr03:33538536..33538557 (22 bp)
AGAACCTGCAGGAGCTCGCACTGGG
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--376--9191Chr03:33538488..33538512 (25 bp)
TCCTGTGGGCGCTCCGGAAACCGGC
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--1056--3531Chr03:33538289..33538313 (25 bp)
CATCGAGAGCCTCGTGTTCGGCCAC
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--1001--10591Chr03:33538273..33538297 (25 bp)
TTCGGCCACCCGCTGGTGATGCTGC
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--657--6691Chr03:33538247..33538271 (25 bp)
GTTCGTCGTCGACCAGGGCCTCGTC
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--353--6311Chr03:33538108..33538132 (25 bp)
GATGAACGCAAGGTGTTCGGCGAAA
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--235--8691Chr03:33538095..33538119 (25 bp)
TGTTCGGCGAAAACGCCAGGAAAAT
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--389--5751Chr03:33538047..33538071 (25 bp)
GACGGCAGGAGCAGTACTTCGACGA
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--512--971Chr03:33538041..33538065 (25 bp)
AGGAGCAGTACTTCGACGAGCTGGT
LOC_Os03g59030
OsAffx.25762.1.S1_x_at--466--3451Chr03:33538036..33538060 (25 bp)
CAGTACTTCGACGAGCTGGTGGAGC
LOC_Os03g59030
Target Sequence 
TGACGGCAAAGAACCTGCAGGAGCTCGCACTGGGGCTGGAGCTCGCTGGCGTGCGCTTCCTGTGGGCGCTCCGGAAACCG
GCGGCGGGAACGCTGAGCCACGCCTCCGCCGCCGACGCCGACGAGCTCCTCCCCGACGGGTTCGAGGAGCGGACGCGCGG
GCGCGGCGTGGTGTGGACGGGGTGGGTGCCGCAGGTGGAGGTGCTCGCGCACGCCGCGGTGGGCGCGTTCCTGACGCACT
GCGGCTGGGGCTCCACCATCGAGAGCCTCGTGTTCGGCCACCCGCTGGTGATGCTGCCGTTCGTCGTCGACCAGGGCCTC
GTCGCGCGGGCGATGGCGGAGAGGGGCGTCGGCGTGGAGGTCGCCAGGGAGGACGACGACGAGGGCTCGTTCGGCCGGCA
CGACGTCGCCGCGGCGGTGCGGCGCGTCATGGTGGAGGATGAACGCAAGGTGTTCGGCGAAAACGCCAGGAAAATGAAGG
AAGCGGTTGGGGATCAGCGACGGCAGGAGCAGTACTTCGACGAGCTGGTGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25762.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis