Browse Element(s) Details


Os.2219.1.S1_at

Description gb:AF072694.1
DB_XREF= gi:3293558
GEN=GER7
TID=Os.2219.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.2219 (NCBI UniGene Cluster)
DEF=Oryza sativa germin-like protein 7 (GER7) mRNA, complete cds.
PROD=germin-like protein 7
FL= gb:AK062698.1 gb:AF072694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5898011/11Germin-like protein subfamily T member 1 precursor, putative, expressed
LOC_Os03g590101/11Germin-like protein subfamily T member 1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58940OsAffx.3640.1.S1_at9/113+33502713..33505138Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58960Os.15684.1.S1_at11/113+33509487..33515062DHHC zinc finger domain containing protein, expressed
LOC_Os03g58970Os.46759.1.S1_at11/113+33518427..33524163expressed protein
LOC_Os03g58970Os.19308.1.S1_x_at11/113+33518427..33524163expressed protein
LOC_Os03g58980Os.2219.1.S1_at11/113+33525399..33526254Germin-like protein subfamily T member 1 precursor, putative, expressed
LOC_Os03g58990OsAffx.13545.1.S1_at11/113+33527651..33528340Cupin family protein
LOC_Os03g59010OsAffx.13545.1.S1_at2/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59010Os.2219.1.S1_at1/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59020Os.20293.1.S1_at10/113+33531696..33537008T-complex protein 1, theta subunit, putative, expressed
LOC_Os03g59030OsAffx.25762.1.S1_x_at11/113+33537989..33539777Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os03g59040Os.3409.1.S1_at11/113+33544237..33551375Squalene synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2219.1.S1_at--451--8611Chr03:33525805..33525829 (25 bp)
TGGTGCACGTCATCACCGGCCGGAT
LOC_Os03g58980
Os.2219.1.S1_at--503--391Chr03:33525816..33525840 (25 bp)
ATCACCGGCCGGATGCTCGTCGGGT
LOC_Os03g58980
Os.2219.1.S1_at--623--9011Chr03:33525916..33525940 (25 bp)
TGCACTTCCAGTACAACCCTGGGAA
LOC_Os03g58980
Os.2219.1.S1_at--98--9272Chr03:33530745..33530769 (25 bp)
TCCTCGCCAAGAGCTTCCAGGTGGA
LOC_Os03g59010
Os.2219.1.S1_at--679--1271Chr03:33526072..33526096 (25 bp)
AGATCATCAAACTGCTCAAGTCCAA
LOC_Os03g58980
Os.2219.1.S1_at--11--1471Chr03:33526102..33526126 (25 bp)
AGAAGTGACACTGACGTCTCATCCG
LOC_Os03g58980
Os.2219.1.S1_at--165--551Chr03:33526122..33526146 (25 bp)
ATCCGCCATGGCTACAGCATATCTG
LOC_Os03g58980
Os.2219.1.S1_at--1070--471Chr03:33526142..33526166 (25 bp)
ATCTGTTTTGCTTTAGCTGTCCTAG
LOC_Os03g58980
Os.2219.1.S1_at--44--7031Chr03:33526172..33526196 (25 bp)
GTAAATAGAGTTGTTTCACGTTTGA
LOC_Os03g58980
Os.2219.1.S1_at--231--9691Chr03:33526187..33526211 (25 bp)
TCACGTTTGATATTTTGGTCCGATA
LOC_Os03g58980
Os.2219.1.S1_at--450--8591Chr03:33526202..33526226 (25 bp)
TGGTCCGATATTTGCCCATTTGGCA
LOC_Os03g58980
Target Sequence 
TGGTGCACGTCATCACCGGCCGGATGCTCGTCGGGTTCGTGAGCACGGCGGGGAAGTACTACTCCAAGGTGGTCGGCGAG
GGGGAGACGTTCGCCATCCCGCGCGGGCTGATGCACTTCCAGTACAACCCTGGGAACGCCTCCGCCCGCGCCATGACGGT
GTTCAACAGCCAGCTCCCCGGCGTCGTGCCCGCCGCGACGGCGCTGTTCGGCGCCGACCCGGAGATCCCCGACGCCGTCC
TCGCCAAGAGCTTCCAGGTGGACGCCGAGATCATCAAACTGCTCAAGTCCAAGTTCAAGAAGTGACACTGACGTCTCATC
CGCCATGGCTACAGCATATCTGTTTTGCTTTAGCTGTCCTAGATACAGTAAATAGAGTTGTTTCACGTTTGATATTTTGG
TCCGATATTTGCCCATTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis