Browse Element(s) Details


Os.20293.1.S1_at

Description gb:AK100651.1
DB_XREF= gi:32985860
TID=Os.20293.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111D11, full insert sequence.
FL= gb:AK100651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5902010/11T-complex protein 1, theta subunit, putative, expressed
LOC_Os09g335001/11Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58960Os.15684.1.S1_at11/113+33509487..33515062DHHC zinc finger domain containing protein, expressed
LOC_Os03g58970Os.46759.1.S1_at11/113+33518427..33524163expressed protein
LOC_Os03g58970Os.19308.1.S1_x_at11/113+33518427..33524163expressed protein
LOC_Os03g58980Os.2219.1.S1_at11/113+33525399..33526254Germin-like protein subfamily T member 1 precursor, putative, expressed
LOC_Os03g58990OsAffx.13545.1.S1_at11/113+33527651..33528340Cupin family protein
LOC_Os03g59010OsAffx.13545.1.S1_at2/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59010Os.2219.1.S1_at1/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59020Os.20293.1.S1_at10/113+33531696..33537008T-complex protein 1, theta subunit, putative, expressed
LOC_Os03g59030OsAffx.25762.1.S1_x_at11/113+33537989..33539777Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os03g59040Os.3409.1.S1_at11/113+33544237..33551375Squalene synthetase, putative, expressed
LOC_Os03g59050Os.12218.1.S1_at11/113+33551445..33556713ATP-dependent RNA helicase An3, putative, expressed
LOC_Os03g59060Os.9183.1.S1_at11/113+33560904..33565466Serine/threonine protein phosphatase PP2A catalytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0010240cellular_componentpyruvate dehydrogenase complex (sensu Viridiplantae)
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
GO:0004802molecular_functiontransketolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20293.1.S1_at--1117--9111Chr03:33536140..33536164 (25 bp)
TGCTGGGCTTAGTGCTATGGAGATA
LOC_Os03g59020
Os.20293.1.S1_at--450--8051Chr03:33536158..33536182 (25 bp)
GGAGATAATATCTTCCCTTTATGCT
LOC_Os03g59020
Os.20293.1.S1_at--834--9571Chr03:33536168..33536192 (25 bp)
TCTTCCCTTTATGCTGAACATGCTG
LOC_Os03g59020
Os.20293.1.S1_at--447--3851Chr03:33536181..33536205 (25 bp)
CTGAACATGCTGGTGGGAATACGAA
LOC_Os03g59020
Os.20293.1.S1_at--1054--10151Chr03:33536709..33536733 (25 bp)
TTACCGTGTTCTGAGGTTTCTCCGA
LOC_Os03g59020
Os.20293.1.S1_at--76--8191Chr03:33536776..33536800 (25 bp)
GGAAGATTTTGGTGCCTGGACAGCA
LOC_Os03g59020
Os.20293.1.S1_at--326--10412Chr11:21298940..21298959 (20 bp)
TTTTGGTGCCTGGACAGCACGTTTG
NONE
Os.20293.1.S1_at--660--7431Chr03:33536847..33536871 (25 bp)
GTGTTTGTGAGTTTGTCTCGGTGTA
LOC_Os03g59020
Os.20293.1.S1_at--87--10372Chr09:19753829..19753922 (24 bp)
TTTTTCTTTGTTGCGCTGAACTCTT
LOC_Os09g33500
Os.20293.1.S1_at--457--2011Chr03:33536968..33536992 (25 bp)
ACTCTTTTTTGTTCTACGGTATGAT
LOC_Os03g59020
Os.20293.1.S1_at--484--3971NONE
CGGTATGATGAATCACTTACGCTCG
NONE
Target Sequence 
TGCTGGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACT
TGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAAATAC
TCNGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGC
TCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGT
AGACCTCTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGGGCT
GCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATGCCAATGTATCAAAA
TGGTTAGCTCTAAAAAGGATTTGTTCTTTCANANNNNAAANNNNAANNANNNTTTTTCTTTGTTGCGCTGAACTCTTTTT
TGTTCTACGGTATGATGAATCACTTACGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis