Browse Element(s) Details


Os.19308.1.S1_x_at

Description gb:AK073430.1
DB_XREF= gi:32983453
TID=Os.19308.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043M17, full insert sequence.
FL= gb:AK073430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5897011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58930NANA3+33492522..33495095expressed protein
LOC_Os03g58940OsAffx.3640.1.S1_at9/113+33502713..33505138Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58960Os.15684.1.S1_at11/113+33509487..33515062DHHC zinc finger domain containing protein, expressed
LOC_Os03g58970Os.46759.1.S1_at11/113+33518427..33524163expressed protein
LOC_Os03g58970Os.19308.1.S1_x_at11/113+33518427..33524163expressed protein
LOC_Os03g58980Os.2219.1.S1_at11/113+33525399..33526254Germin-like protein subfamily T member 1 precursor, putative, expressed
LOC_Os03g58990OsAffx.13545.1.S1_at11/113+33527651..33528340Cupin family protein
LOC_Os03g59010OsAffx.13545.1.S1_at2/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59010Os.2219.1.S1_at1/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59020Os.20293.1.S1_at10/113+33531696..33537008T-complex protein 1, theta subunit, putative, expressed
LOC_Os03g59030OsAffx.25762.1.S1_x_at11/113+33537989..33539777Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os03g59040Os.3409.1.S1_at11/113+33544237..33551375Squalene synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19308.1.S1_x_at--452--671Chr03:33523183..33523554 (25 bp)
ATGAACCCTGATAGTGTCCTTCCAA
LOC_Os03g58970
Os.19308.1.S1_x_at--865--1191Chr03:33523593..33523617 (25 bp)
AGTAGGATCAGTGGCAACCCTCGAA
LOC_Os03g58970
Os.19308.1.S1_x_at--197--3391Chr03:33523663..33523687 (25 bp)
CAGCGCAATCTATATCGTCGGTCAG
LOC_Os03g58970
Os.19308.1.S1_x_at--1026--3491Chr03:33523692..33523716 (25 bp)
CATGGCAGCTCCTAGTGTACATAGT
LOC_Os03g58970
Os.19308.1.S1_x_at--534--2251Chr03:33523754..33523778 (25 bp)
AAATAGTTTCTCCATTTCCCTGTTG
LOC_Os03g58970
Os.19308.1.S1_x_at--844--6871Chr03:33523778..33523802 (25 bp)
GTATTCTCTCCTTAGGTCTTGTATA
LOC_Os03g58970
Os.19308.1.S1_x_at--371--1111Chr03:33523805..33523829 (25 bp)
AGTGAGTATCTCCTAGCTTTGTTCC
LOC_Os03g58970
Os.19308.1.S1_x_at--54--273Chr03:33523853..33523877 (25 bp)
ATAGACCTCGTTTGGATGGGCCTCA
LOC_Os03g58970
Os.19308.1.S1_x_at--161--551Chr03:33523878..33523902 (25 bp)
ATCCCAGTCCATCCATGTGTATAGG
LOC_Os03g58970
Os.19308.1.S1_x_at--265--10591Chr03:33523952..33523976 (25 bp)
TTCTGCATATTCCAAAGGCGGCCTT
LOC_Os03g58970
Os.19308.1.S1_x_at--495--5811Chr03:33524043..33524067 (25 bp)
GACCCAGTGTAGTTTGTCTTCTTGG
LOC_Os03g58970
Target Sequence 
ATGAACCCTGATAGTGTCCTTCCAAGCGACGATTGGTTNATNGACGTTGCTAATGACACTATCAGTAGGATCAGTGGCAA
CCCTCGAACTGCCAATGGGGATAGGGAGGTGAACAGCCCGACAGCCTCCGTTTCAGCGCAATCTATATCGTCGGTCAGAT
CCCATGGCAGCTCCTAGTGTACATAGTAGCCTTAGTAACCAGGTCTTGTATAGGAGTGAGTGTGAAATAGTTTCTCCATT
TCCCTGTTGTATTCTCTCCTTAGGTCTTGTATAGGAGTGAGTATCTCCTAGCTTTGTTCCCCATCTGGTGTACATGCCAG
TATATAGACCTCGTTTGGATGGGCCTCAATCCCAGTCCATCCATGTGTATAGGCCAGGATTCTGAACTAAAATCCTGGCC
CAAACTCATGGATGGAATGGGATTCTGCATATTCCAAAGGCGGCCTTAGGAAAATATTTGAATTGAATCGGTTGTTNAGA
GATGTGTCTTTGTAAATTTGGTGAGAAATGTATGACCCAGTGTAGTTTGTCTTCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19308.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis