Browse Element(s) Details


OsAffx.13545.1.S1_at

Description tigr:9631.m05806
TID=OsAffx.13545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5899011/11Cupin family protein
LOC_Os03g590102/11Germin-like protein subfamily T member 1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58940OsAffx.3640.1.S1_at9/113+33502713..33505138Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58960Os.15684.1.S1_at11/113+33509487..33515062DHHC zinc finger domain containing protein, expressed
LOC_Os03g58970Os.46759.1.S1_at11/113+33518427..33524163expressed protein
LOC_Os03g58970Os.19308.1.S1_x_at11/113+33518427..33524163expressed protein
LOC_Os03g58980Os.2219.1.S1_at11/113+33525399..33526254Germin-like protein subfamily T member 1 precursor, putative, expressed
LOC_Os03g58990OsAffx.13545.1.S1_at11/113+33527651..33528340Cupin family protein
LOC_Os03g59010OsAffx.13545.1.S1_at2/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59010Os.2219.1.S1_at1/113+33530129..33530806Germin-like protein subfamily T member 1 precursor, putative
LOC_Os03g59020Os.20293.1.S1_at10/113+33531696..33537008T-complex protein 1, theta subunit, putative, expressed
LOC_Os03g59030OsAffx.25762.1.S1_x_at11/113+33537989..33539777Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os03g59040Os.3409.1.S1_at11/113+33544237..33551375Squalene synthetase, putative, expressed
LOC_Os03g59050Os.12218.1.S1_at11/113+33551445..33556713ATP-dependent RNA helicase An3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13545.1.S1_at--336--3591Chr03:33528273..33528297 (25 bp)
CATTGCTCGTCCTGACGCCTGACGG
LOC_Os03g58990
OsAffx.13545.1.S1_at--1003--9391Chr03:33528271..33528291 (21 bp)
TCGTCCTGACGCCTGACGGCGAGTC
LOC_Os03g58990
OsAffx.13545.1.S1_at--102--10551Chr03:33528086..33528110 (25 bp)
TTCTTCGCCGGCAACACGGAGAACC
LOC_Os03g58990
OsAffx.13545.1.S1_at--1089--3971Chr03:33528057..33528081 (25 bp)
CGGGTTCAACGCGACGCTGGGCAAC
LOC_Os03g58990
OsAffx.13545.1.S1_at--896--9711Chr03:33528052..33528076 (25 bp)
TCAACGCGACGCTGGGCAACGTGCA
LOC_Os03g58990
OsAffx.13545.1.S1_at--149--1771Chr03:33528044..33528068 (25 bp)
ACGCTGGGCAACGTGCAGGCGTTCC
LOC_Os03g58990
OsAffx.13545.1.S1_at--428--8611Chr03:33527823..33527950 (25 bp)
TGGTGCACGTATCGTCGCCGTACAA
LOC_Os03g58990
OsAffx.13545.1.S1_at--211--6911Chr03:33527815..33527942 (25 bp)
GTATCGTCGCCGTACAACGTCGGCG
LOC_Os03g58990
OsAffx.13545.1.S1_at--701--4552Chr03:33530651..33530675 (25 bp)
GCCCAGGTCATCACGGCGTTCAACA
LOC_Os03g59010
OsAffx.13545.1.S1_at--25--7832Chr03:33530656..33530680 (25 bp)
GGTCATCACGGCGTTCAACAGCCAG
LOC_Os03g59010
OsAffx.13545.1.S1_at--339--4511Chr03:33527683..33527707 (25 bp)
GCCGAGAACTACCAGGTGGACGTCA
LOC_Os03g58990
Target Sequence 
CATTGCTCGTCCTGACGCCTGACGGCGAGTCCACGGCGGTCATCTCCGACGACTTCTTCTTCGCCGGCAACACGGAGAAC
CGGTTCGGGTTCAACGCGACGCTGGGCAACGTGCAGGCGTTCCCGGGGCTGAACACGCTCGGCGTGTCCATCAACCGCGG
CGACTTCGCCCCCGGCGGCCTCAACGCGCTGCACAGCCACCCACGCGCCGCCGAGCTGGTGCACGTATCGTCGCCGTACA
ACGTCGGCGACGTCGCCGCCCAGGTCATCACGGCGTTCAACAGCCAGCTGCCCGGCGTCGTGGCCGCCGCGCCGTCGCTG
TTCGGCTCCGACCCGGAGATACCCGACGCCGTCCTCGCCGAGAACTACCAGGTGGACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis