Browse Element(s) Details


Os.47706.1.S1_at

Description gb:CB661394
DB_XREF= gi:29665119
DB_XREF=OSJNEd04C19.r
CLONE=OSJNEd04C19
TID=Os.47706.1
CNT=24
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47706 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567725.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5909011/11cell death suppressor protein Lls1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59050Os.12218.1.S1_at11/113+33551445..33556713ATP-dependent RNA helicase An3, putative, expressed
LOC_Os03g59060Os.9183.1.S1_at11/113+33560904..33565466Serine/threonine protein phosphatase PP2A catalytic subunit, putative, expressed
LOC_Os03g59070Os.22413.1.S1_at10/113+33566308..33569219phosphatidic acid phosphatase family protein, putative, expressed
LOC_Os03g59080Os.22872.1.S1_at11/113+33570865..33575781acyl-activating enzyme 18, putative, expressed
LOC_Os03g59090Os.47706.1.S1_at11/113+33577546..33580082cell death suppressor protein Lls1 homolog, putative, expressed
LOC_Os03g59100OsAffx.25764.2.S1_at11/113+33584044..33586453Rieske domain containing protein, expressed
LOC_Os03g59110OsAffx.25764.1.S1_at11/113+33588284..33592689Rieske domain containing protein, expressed
LOC_Os03g59120OsAffx.25764.3.S1_at11/113+33598501..33600888Rieske domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015996biological_processchlorophyll catabolism
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47706.1.S1_at--447--8591Chr03:33579710..33579734 (25 bp)
TGGTCACGTCGGTTGTGCAGAGATC
LOC_Os03g59090
Os.47706.1.S1_at--837--9431Chr03:33579718..33579742 (25 bp)
TCGGTTGTGCAGAGATCCGCCGTCG
LOC_Os03g59090
Os.47706.1.S1_at--634--631Chr03:33579827..33579851 (25 bp)
ATGCTTACAAGTGATCGTCGATGCG
LOC_Os03g59090
Os.47706.1.S1_at--873--7391Chr03:33579837..33579861 (25 bp)
GTGATCGTCGATGCGTCCAGGAAAT
LOC_Os03g59090
Os.47706.1.S1_at--289--4651Chr03:33579849..33579873 (25 bp)
GCGTCCAGGAAATCAGAGAGTTCTT
LOC_Os03g59090
Os.47706.1.S1_at--426--6071Chr03:33579866..33579890 (25 bp)
GAGTTCTTTGTTGCTGGGAATTCCT
LOC_Os03g59090
Os.47706.1.S1_at--1141--4711Chr03:33579878..33579902 (25 bp)
GCTGGGAATTCCTTAGCTTCTAATT
LOC_Os03g59090
Os.47706.1.S1_at--99--1411Chr03:33579924..33579948 (25 bp)
AGAAAACACAACCAAGTATGCTTGA
LOC_Os03g59090
Os.47706.1.S1_at--273--4931Chr03:33579943..33579967 (25 bp)
GCTTGATATCGATAGCATCTGTATA
LOC_Os03g59090
Os.47706.1.S1_at--1147--9551Chr03:33579982..33580006 (25 bp)
TCTTAAGAGTTAGCTGACGATTTCA
LOC_Os03g59090
Os.47706.1.S1_at--635--5771Chr03:33579997..33580021 (25 bp)
GACGATTTCATAGGATGCAGCTAAA
LOC_Os03g59090
Target Sequence 
TGGTCACGTCGGTTGTGCAGAGATCCGCCGTCGTGGCTGCGGCCGTGCTGTGCTTCGCCGCCTCCCGCTGGCTCGCCAAC
TTCATCGAGAAGAACTTCTATTTCCAGGACTACGTCCATGCTTACAAGTGATCGTCGATGCGTCCAGGAAATCAGAGAGT
TCTTTGTTGCTGGGAATTCCTTAGCTTCTAATTTAGCAGCTTAAAAATGTATATAGAAAACACAACCAAGTATGCTTGAT
ATCGATAGCATCTGTATATAAACAACTGATCATCTTAAGAGTTAGCTGACGATTTCATAGGATGCAGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis