Browse Element(s) Details


OsAffx.25764.2.S1_at

Description tigr:9631.m05817
TID=OsAffx.25764.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative iron-sulfur cluster-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5910011/11Rieske domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59060Os.9183.1.S1_at11/113+33560904..33565466Serine/threonine protein phosphatase PP2A catalytic subunit, putative, expressed
LOC_Os03g59070Os.22413.1.S1_at10/113+33566308..33569219phosphatidic acid phosphatase family protein, putative, expressed
LOC_Os03g59080Os.22872.1.S1_at11/113+33570865..33575781acyl-activating enzyme 18, putative, expressed
LOC_Os03g59090Os.47706.1.S1_at11/113+33577546..33580082cell death suppressor protein Lls1 homolog, putative, expressed
LOC_Os03g59100OsAffx.25764.2.S1_at11/113+33584044..33586453Rieske domain containing protein, expressed
LOC_Os03g59110OsAffx.25764.1.S1_at11/113+33588284..33592689Rieske domain containing protein, expressed
LOC_Os03g59120OsAffx.25764.3.S1_at11/113+33598501..33600888Rieske domain containing protein, expressed
LOC_Os03g59140OsAffx.22848.3.S1_x_at2/113+33606647..33611287retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015996biological_processchlorophyll catabolism
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25764.2.S1_at--105--7331Chr03:33585653..33585677 (25 bp)
GTGCATCCCTGTGGCTCCTGGAAGG
LOC_Os03g59100
OsAffx.25764.2.S1_at--851--5011Chr03:33585679..33585703 (25 bp)
GCAGGGTGATATGGGTGTTTCCACA
LOC_Os03g59100
OsAffx.25764.2.S1_at--214--7431Chr03:33585693..33585717 (25 bp)
GTGTTTCCACAGAGCGTCAGCGCCT
LOC_Os03g59100
OsAffx.25764.2.S1_at--87--3851Chr03:33585721..33585745 (25 bp)
CTGACAAGTTCATACCACGGTGGCT
LOC_Os03g59100
OsAffx.25764.2.S1_at--230--7731Chr03:33585739..33585763 (25 bp)
GGTGGCTTCACCACATGGTGACGAA
LOC_Os03g59100
OsAffx.25764.2.S1_at--257--7351Chr03:33585756..33585780 (25 bp)
GTGACGAACACCGTTTTGGATTCGG
LOC_Os03g59100
OsAffx.25764.2.S1_at--130--6571Chr03:33585774..33585798 (25 bp)
GATTCGGATTTGTACCTCCTCCATA
LOC_Os03g59100
OsAffx.25764.2.S1_at--395--10291Chr03:33585901..33585925 (25 bp)
TTTCGCGGCGGTTGGCGTTGATAAA
LOC_Os03g59100
OsAffx.25764.2.S1_at--600--3671Chr03:33585940..33585964 (25 bp)
CTATGTTCCCACTTTATCTGACAAC
LOC_Os03g59100
OsAffx.25764.2.S1_at--643--6611Chr03:33586013..33586037 (25 bp)
GTTGGCTGGGCAACTCCAATGGTTA
LOC_Os03g59100
OsAffx.25764.2.S1_at--334--4831Chr03:33586069..33586204 (25 bp)
GCTCATGGAGAGGTACTGGTCACAT
LOC_Os03g59100
Target Sequence 
GTGCATCCCTGTGGCTCCTGGAAGGAGCAGGGTGATATGGGTGTTTCCACAGAGCGTCAGCGCCTGGCCTGACAAGTTCA
TACCACGGTGGCTTCACCACATGGTGACGAACACCGTTTTGGATTCGGATTTGTACCTCCTCCATATCGAGGAGCGCAAT
TTCGCGGCGGTTGGCGTTGATAAATGGCAGAAAGCTTGCTATGTTCCCACTTTATCTGACAACATGATCATCACCTTCAG
AAACTGGTTCAGAAAGTACTGCAAGCATCAGGTTGGCTGGGCAACTCCAATGGTTAATCAGCTGCCAACAACTCCTACCA
AAGATCAGCTCATGGAGAGGTACTGGTCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25764.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis