Browse Element(s) Details


OsAffx.2812.1.S1_at

Description tigr:9630.m02946
TID=OsAffx.2812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SART-1 family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3073011/11SART-1 family protein, expressed
LOC_Os03g591521/11lethal leaf spot 1, putative
LOC_Os01g191201/11hypothetical protein
LOC_Os02g091601/11hypothetical protein
LOC_Os05g431001/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30690OsAffx.24515.1.S1_at11/112+18279457..18280842oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g30700OsAffx.2811.1.S1_at9/112+18284243..18286689Myb-like DNA-binding domain containing protein
LOC_Os02g30714Os.49976.1.S1_at11/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.52574.2.S1_x_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.26986.1.A1_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30730Os.10257.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730OsAffx.2812.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730Os.10257.1.S1_x_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30740NANA2+18314279..18317392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30750NANA2+18318959..18320395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30760NANA2+18321327..18321536hypothetical protein
LOC_Os02g30770Os.47463.1.S1_x_at4/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30770Os.14491.2.S1_x_at3/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30780Os.18404.1.S1_at11/112+18329028..18329917LGC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015996biological_processchlorophyll catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003676molecular_functionnucleic acid binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0009055molecular_functionelectron carrier activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2812.1.S1_at--784--6031Chr02:18306186..18306286 (25 bp)
GAGTTAACATCTGTACTTACAAGGC
LOC_Os02g30730
OsAffx.2812.1.S1_at--785--151Chr02:18306127..18306151 (25 bp)
ATTTAAAATGTTGTCGTGTCTCCAC
LOC_Os02g30730
OsAffx.2812.1.S1_at--309--8711Chr02:18306116..18306140 (25 bp)
TGTCGTGTCTCCACAAATCTACATT
LOC_Os02g30730
OsAffx.2812.1.S1_at--851--7451Chr02:18306112..18306136 (25 bp)
GTGTCTCCACAAATCTACATTGGTT
LOC_Os02g30730
OsAffx.2812.1.S1_at--542--7411Chr02:18306036..18306060 (25 bp)
GTGTTTTTCACGTACTCTGTCCCAT
LOC_Os02g30730
OsAffx.2812.1.S1_at--10--10332Chr02:18306031..18306055 (25 bp)
TTTCACGTACTCTGTCCCATAAAAA
LOC_Os02g30730
OsAffx.2812.1.S1_at--502--8877Chr11:7743955..7743974 (20 bp)
TGATGTGATACATTCTAGTACCATA
NONE
OsAffx.2812.1.S1_at--939--6972Chr03:33625315..33625388 (25 bp)
GTACCATAAATTTGGACATGAGTAT
LOC_Os03g59152
OsAffx.2812.1.S1_at--461--2291Chr02:18305948..18305972 (25 bp)
AAATGTGTAACATTCTGCCTCCCAA
LOC_Os02g30730
OsAffx.2812.1.S1_at--510--111Chr02:18305937..18305961 (25 bp)
ATTCTGCCTCCCAAAAACATGTGTA
LOC_Os02g30730
OsAffx.2812.1.S1_at--906--2111Chr02:18305921..18305945 (25 bp)
ACATGTGTAACATTCTGTACTAGAT
LOC_Os02g30730
Target Sequence 
GAGTTAACATCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCT
CCACAAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCA
CGTACTCTGTCCCATAAAAAACAAATCTAGTATATGATGTGATACATTCTAGTACCATAAATTTGGACATGAGTATTAAA
ATGTGTAACATTCTGCCTCCCAAAAACATGTGTAACATTCTGTACTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis