Browse Element(s) Details


OsAffx.2811.1.S1_at

Description tigr:9630.m02943
TID=OsAffx.2811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g307009/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30660OsAffx.24513.1.S1_at11/112+18266470..18266694hypothetical protein
LOC_Os02g30670Os.20069.2.S1_at1/112+18271782..18272532hypothetical protein
LOC_Os02g30680Os.38395.4.S1_x_at9/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.5.S1_at5/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.2.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.3.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30690OsAffx.24515.1.S1_at11/112+18279457..18280842oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g30700OsAffx.2811.1.S1_at9/112+18284243..18286689Myb-like DNA-binding domain containing protein
LOC_Os02g30714Os.49976.1.S1_at11/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.52574.2.S1_x_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.26986.1.A1_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30730Os.10257.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730OsAffx.2812.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730Os.10257.1.S1_x_at11/112+18305663..18311428SART-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2811.1.S1_at--506--3891Chr02:18284550..18284574 (25 bp)
CTGTGGCGCCACTACCCGGGTTGGA
LOC_Os02g30700
OsAffx.2811.1.S1_at--1056--1031Chr02:18284610..18284634 (25 bp)
AGGTGACGGCCATTGGCATCGCTGC
LOC_Os02g30700
OsAffx.2811.1.S1_at--596--4911Chr02:18284639..18284663 (25 bp)
GCTTCTCCGAATGCAGCTGCTACGA
LOC_Os02g30700
OsAffx.2811.1.S1_at--559--3011Chr02:18284648..18284672 (25 bp)
AATGCAGCTGCTACGAGCGCTCCGA
LOC_Os02g30700
OsAffx.2811.1.S1_at--599--5991Chr02:18284703..18284727 (25 bp)
GAGAGCTGAAAAATCCGCGGAAGAC
LOC_Os02g30700
OsAffx.2811.1.S1_at--754--8091NONE
GGACCAGGGAAGAGCATAGCCAATT
NONE
OsAffx.2811.1.S1_at--431--311NONE
ATAGCCAATTCTTGCACGGGATTAG
NONE
OsAffx.2811.1.S1_at--771--8471Chr02:18286454..18286478 (25 bp)
TGGCGAGCGAGTTCGTGAAGACCAA
LOC_Os02g30700
OsAffx.2811.1.S1_at--607--8991Chr02:18286469..18286493 (25 bp)
TGAAGACCAAGAGCTCGACCCAGAT
LOC_Os02g30700
OsAffx.2811.1.S1_at--253--4411Chr02:18286499..18286523 (25 bp)
GCCACTACCAGAAGTTCTGCATCAG
LOC_Os02g30700
OsAffx.2811.1.S1_at--194--5171Chr02:18286550..18286574 (25 bp)
GCAAGCGGGCGAGCATCCACGACAT
LOC_Os02g30700
Target Sequence 
CTGTGGCGCCACTACCCGGGTTGGAGGCCGACGCGGCGGCCGGCGCCGGAGAGTCAGCGGAGGTGACGGCCATTGGCATC
GCTGCCGCCGCTTCTCCGAATGCAGCTGCTACGAGCGCTCCGACCATCGGCGGCGGGGTGGTATTGAAATCTAGAGAGCT
GAAAAATCCGCGGAAGACGAGGATGGCCGGCGGCGGGCCAAGGAAGAAGGCGGAGATGTGGACCAGGGAAGAGCATAGCC
AATTCTTGCACGGGATTAGTACGTACGGGAAGGGGAATTGGAAGGCGCTGGCGAGCGAGTTCGTGAAGACCAAGAGCTCG
ACCCAGATCGCGAGCCACTACCAGAAGTTCTGCATCAGGGAAGAGAAGAGGAGGCTGAGCAAGTGCAAGCGGGCGAGCAT
CCACGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis