Browse Element(s) Details


OsAffx.24513.1.S1_at

Description tigr:9630.m02939
TID=OsAffx.24513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3066011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30650Os.8967.1.S1_a_at11/112+18246701..18250149heavy metal-associated domain containing protein, expressed
LOC_Os02g30660OsAffx.24513.1.S1_at11/112+18266470..18266694hypothetical protein
LOC_Os02g30670Os.20069.2.S1_at1/112+18271782..18272532hypothetical protein
LOC_Os02g30680Os.38395.4.S1_x_at9/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.5.S1_at5/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.2.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.3.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30690OsAffx.24515.1.S1_at11/112+18279457..18280842oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g30700OsAffx.2811.1.S1_at9/112+18284243..18286689Myb-like DNA-binding domain containing protein
LOC_Os02g30714Os.49976.1.S1_at11/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.52574.2.S1_x_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.26986.1.A1_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24513.1.S1_at--492--6071Chr02:18266502..18266526 (25 bp)
GAGTAGCGCGGTGCCCGGGTGGAGC
LOC_Os02g30660
OsAffx.24513.1.S1_at--513--1631Chr02:18266527..18266551 (25 bp)
AGCGGCAATGGCGTGGGCAACATGG
LOC_Os02g30660
OsAffx.24513.1.S1_at--649--3991Chr02:18266538..18266562 (25 bp)
CGTGGGCAACATGGCGAAGCAGCAC
LOC_Os02g30660
OsAffx.24513.1.S1_at--861--5051Chr02:18266556..18266580 (25 bp)
GCAGCACAAGATGGCTAGCTTGGGT
LOC_Os02g30660
OsAffx.24513.1.S1_at--66--3831Chr02:18266614..18266638 (25 bp)
CTGCCGACTTGCTATGCCTGCTCGA
LOC_Os02g30660
OsAffx.24513.1.S1_at--488--5691Chr02:18266619..18266643 (25 bp)
GACTTGCTATGCCTGCTCGACGAAC
LOC_Os02g30660
OsAffx.24513.1.S1_at--757--2051Chr02:18266620..18266644 (25 bp)
ACTTGCTATGCCTGCTCGACGAACT
LOC_Os02g30660
OsAffx.24513.1.S1_at--349--10731Chr02:18266622..18266646 (25 bp)
TTGCTATGCCTGCTCGACGAACTTG
LOC_Os02g30660
OsAffx.24513.1.S1_at--319--4871Chr02:18266624..18266648 (25 bp)
GCTATGCCTGCTCGACGAACTTGTG
LOC_Os02g30660
OsAffx.24513.1.S1_at--874--10131Chr02:18266626..18266650 (25 bp)
TATGCCTGCTCGACGAACTTGTGGG
LOC_Os02g30660
OsAffx.24513.1.S1_at--819--4791Chr02:18266633..18266657 (25 bp)
GCTCGACGAACTTGTGGGGAAACCA
LOC_Os02g30660
Target Sequence 
GAGTAGCGCGGTGCCCGGGTGGAGCAGCGGCAATGGCGTGGGCAACATGGCGAAGCAGCACAAGATGGCTAGCTTGGGTG
GGGGTGTGCTGATGCCTGCGGGGACCGCACCGCTGCCGACTTGCTATGCCTGCTCGACGAACTTGTGGGGAAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis