Browse Element(s) Details


Os.8967.1.S1_a_at

Description gb:AK073949.1
DB_XREF= gi:32983972
TID=Os.8967.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073M20, full insert sequence.
FL= gb:AK073949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3065011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30620Os.14990.1.S1_a_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.1.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.2.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30624Os.12107.1.S1_a_at10/112+18225620..18229911U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os02g30630Os.1851.1.S1_at11/112+18230204..18232481Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os02g30640Os.25021.1.A1_at11/112+18233350..18235970expressed protein
LOC_Os02g30650Os.8967.1.S1_a_at11/112+18246701..18250149heavy metal-associated domain containing protein, expressed
LOC_Os02g30660OsAffx.24513.1.S1_at11/112+18266470..18266694hypothetical protein
LOC_Os02g30670Os.20069.2.S1_at1/112+18271782..18272532hypothetical protein
LOC_Os02g30680Os.38395.4.S1_x_at9/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.5.S1_at5/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.2.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.3.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0046916biological_processtransition metal ion homeostasis
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
GO:0046914molecular_functiontransition metal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8967.1.S1_a_at--804--8811Chr02:18249633..18249657 (25 bp)
TGATAGCAATGCTGCCGAGGTTGAA
LOC_Os02g30650
Os.8967.1.S1_a_at--982--5971Chr02:18249670..18249694 (25 bp)
GAGAAAGATCCTTCAGCCTTGGCTG
LOC_Os02g30650
Os.8967.1.S1_a_at--51--4451Chr02:18249685..18249709 (25 bp)
GCCTTGGCTGCTGCTAATCTGTATA
LOC_Os02g30650
Os.8967.1.S1_a_at--380--151Chr02:18249713..18249737 (25 bp)
ATTACCCAAGATTCAGCAACCCTGG
LOC_Os02g30650
Os.8967.1.S1_a_at--419--7951Chr02:18249739..18249763 (25 bp)
GGATATGGTGTTCCTGGCTACGCAT
LOC_Os02g30650
Os.8967.1.S1_a_at--755--8931Chr02:18249789..18249813 (25 bp)
TGACGAGAATCCAAACGCCTGTGTT
LOC_Os02g30650
Os.8967.1.S1_a_at--1065--9771Chr02:18249858..18249882 (25 bp)
TAAGAGTGAGACTACGCATCCCCTA
LOC_Os02g30650
Os.8967.1.S1_a_at--873--2291Chr02:18249962..18249986 (25 bp)
AAATGTGAACTGTTGGCCTCGTCTC
LOC_Os02g30650
Os.8967.1.S1_a_at--347--9551Chr02:18249985..18250009 (25 bp)
TCTATTGTCGGCCTTCATGGACATT
LOC_Os02g30650
Os.8967.1.S1_a_at--218--6551Chr02:18250034..18250058 (25 bp)
GATTTTGCTTTGAGCTTTCTCTCTA
LOC_Os02g30650
Os.8967.1.S1_a_at--276--9511Chr02:18250053..18250077 (25 bp)
TCTCTATTGGCTTTCCTTTTGTAAA
LOC_Os02g30650
Target Sequence 
TGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGC
ATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGAC
GAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAATTGGGGGAAATAAGAGTGAGACTAC
GCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTC
ATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTA
GGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8967.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis