Browse Element(s) Details


Os.25021.1.A1_at

Description gb:AK067961.1
DB_XREF= gi:32977979
TID=Os.25021.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123J20, full insert sequence.
FL= gb:AK067961.1 gb:AK104001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3064011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30610Os.57172.1.S1_at11/112+18213398..18214905expressed protein
LOC_Os02g30620Os.14990.1.S1_a_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.1.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.2.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30624Os.12107.1.S1_a_at10/112+18225620..18229911U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os02g30630Os.1851.1.S1_at11/112+18230204..18232481Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os02g30640Os.25021.1.A1_at11/112+18233350..18235970expressed protein
LOC_Os02g30650Os.8967.1.S1_a_at11/112+18246701..18250149heavy metal-associated domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25021.1.A1_at--214--8011Chr02:18233878..18233902 (25 bp)
GGATGGCTCAGGCACTCAAAACTAT
LOC_Os02g30640
Os.25021.1.A1_at--466--8191Chr02:18233838..18233862 (25 bp)
GGAAGAGTTCGCTACCACAAAAGCA
LOC_Os02g30640
Os.25021.1.A1_at--462--1811Chr02:18233804..18233828 (25 bp)
ACCCATGGCGGGATTTGCAACCTAT
LOC_Os02g30640
Os.25021.1.A1_at--564--3471Chr02:18233758..18233782 (25 bp)
CAGGGATGGATCCAAGTCCTGGCTT
LOC_Os02g30640
Os.25021.1.A1_at--605--8491Chr02:18233739..18233763 (25 bp)
TGGCTTCCAGAATCACTGCGTGCAA
LOC_Os02g30640
Os.25021.1.A1_at--228--5291Chr02:18233713..18233737 (25 bp)
GAAGGATACATCTGACCGAGGCCAA
LOC_Os02g30640
Os.25021.1.A1_at--494--4931Chr02:18233666..18233690 (25 bp)
GCTTGGCAGAGTACCTTGACTTGTC
LOC_Os02g30640
Os.25021.1.A1_at--430--2411Chr02:18233599..18233623 (25 bp)
AAAAATGCTGTTGTTCTCGGTAGAG
LOC_Os02g30640
Os.25021.1.A1_at--789--6711Chr02:18233587..18233611 (25 bp)
GTTCTCGGTAGAGTTTTGTGCCCGC
LOC_Os02g30640
Os.25021.1.A1_at--965--8691Chr02:18233571..18233595 (25 bp)
TGTGCCCGCTGTGTTTCACTTTGAA
LOC_Os02g30640
Os.25021.1.A1_at--791--171Chr02:18233531..18233555 (25 bp)
ATTTTCATTGCTTCCATTGGCCTAG
LOC_Os02g30640
Target Sequence 
GGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCAT
GGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGT
GCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCNCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCNTT
CAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTG
TTTCACTTTGAACGTGGTNNNTTTCTCATTTTCATTGCTTCCATTGGCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25021.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis