Browse Element(s) Details


Os.20069.2.S1_at

Description gb:AK065695.1
DB_XREF= gi:32975713
TID=Os.20069.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037P18, full insert sequence.
FL= gb:AK065695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g306701/11hypothetical protein
LOC_Os04g023801/11hypothetical protein
LOC_Os04g242741/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30650Os.8967.1.S1_a_at11/112+18246701..18250149heavy metal-associated domain containing protein, expressed
LOC_Os02g30660OsAffx.24513.1.S1_at11/112+18266470..18266694hypothetical protein
LOC_Os02g30670Os.20069.2.S1_at1/112+18271782..18272532hypothetical protein
LOC_Os02g30680Os.38395.4.S1_x_at9/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.5.S1_at5/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.2.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.3.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30690OsAffx.24515.1.S1_at11/112+18279457..18280842oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g30700OsAffx.2811.1.S1_at9/112+18284243..18286689Myb-like DNA-binding domain containing protein
LOC_Os02g30714Os.49976.1.S1_at11/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.52574.2.S1_x_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.26986.1.A1_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20069.2.S1_at--1100--9672Chr12:12413462..12413486 (25 bp)
TCACTAATCATCAGTTAGCCCCGTT
NONE
Os.20069.2.S1_at--391--9752Chr12:12413466..12413490 (25 bp)
TAATCATCAGTTAGCCCCGTTTTCA
NONE
Os.20069.2.S1_at--1093--3171Chr11:8547498..8547522 (25 bp)
CAATTCTCGGTTGGTTGTTCATCTC
NONE
Os.20069.2.S1_at--437--9511Chr11:8547494..8547518 (25 bp)
TCTCGGTTGGTTGTTCATCTCCTTT
NONE
Os.20069.2.S1_at--1136--9591Chr11:8547480..8547504 (25 bp)
TCATCTCCTTTGCATATACCAACGT
NONE
Os.20069.2.S1_at--25--10731Chr11:8547471..8547495 (25 bp)
TTGCATATACCAACGTGAATTTTTT
NONE
Os.20069.2.S1_at--873--3726Chr11:7459621..7459644 (24 bp)
ATCGCAAAAGTAGTGGTCAACCGGA
NONE
Os.20069.2.S1_at--819--3851Chr11:8547239..8547263 (25 bp)
CTGTTCGACAGGAGGGCTGTCAAAC
NONE
Os.20069.2.S1_at--246--991Chr11:8547230..8547254 (25 bp)
AGGAGGGCTGTCAAACTGCCCCTGT
NONE
Os.20069.2.S1_at--182--10072Chr02:7215080..7215101 (22 bp)
TAGGGTTTTGATAATGTTTGGTAAG
NONE
Os.20069.2.S1_at--1127--6451Chr11:8546965..8546989 (25 bp)
GATAATTTGTCATGATTCATTTGAA
NONE
Target Sequence 
TCACTAATCATCAGTTAGCCCCGTTTTCACTGTCCCTCCAATTCTCGGTTGGTTGTTCATCTCCTTTGCATATACCAACG
TGAATTTTTTTGAGAATTAATATTATTTTTATGGAAAATCGCAAAAGTAGTGGTCAACCGGAGAAAATCGCGAAAGTAGG
TCCCTGTCGAACGGGTGCAGTTCGATAGGGCGCCTATCGAACGGCCAGAGCGCGACTGGCGAGGAGATCGGAAGGCTACC
GTTCGACAGGACCTGTCGAACAGCCCCCGTTCGACAGGCAGGGCTGTCGAACTGCCCCTGTTCGACAGGAGGGCTGTCAA
ACTGCCCCTGTTCGACAGGATATCCGTCGAACTGGCGTAGTTCGACAGGGTCGCGTTCTCCATTTATTTGTAATAAGTTA
TTTTTTTAATAATATGTAATTTATTTTAGTGTGTAAGAAAGGAAAATATTTTTGTAATGTTATATGTATATGATTTAGGG
TTTTGATAATGTTTGGTAAGAAATTGTAGTATTTTTTTGTTGGTTAAAATATTTGAATTATTTAGTTTCATTATTTTTTG
TATATTTGAATGATAATTTGTCATGATTCATTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20069.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis