Browse Element(s) Details


Os.49976.1.S1_at

Description gb:AK119471.1
DB_XREF= gi:37989094
TID=Os.49976.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-A10, full insert sequence.
FL= gb:AK119471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3071411/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30660OsAffx.24513.1.S1_at11/112+18266470..18266694hypothetical protein
LOC_Os02g30670Os.20069.2.S1_at1/112+18271782..18272532hypothetical protein
LOC_Os02g30680Os.38395.4.S1_x_at9/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.5.S1_at5/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.2.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.3.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30690OsAffx.24515.1.S1_at11/112+18279457..18280842oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g30700OsAffx.2811.1.S1_at9/112+18284243..18286689Myb-like DNA-binding domain containing protein
LOC_Os02g30714Os.49976.1.S1_at11/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.52574.2.S1_x_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.26986.1.A1_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30730Os.10257.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730OsAffx.2812.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730Os.10257.1.S1_x_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30740NANA2+18314279..18317392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30750NANA2+18318959..18320395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30760NANA2+18321327..18321536hypothetical protein
LOC_Os02g30770Os.47463.1.S1_x_at4/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30770Os.14491.2.S1_x_at3/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30780Os.18404.1.S1_at11/112+18329028..18329917LGC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49976.1.S1_at--1003--7791Chr02:18302327..18302351 (25 bp)
GGAGGTCGGGATCACAGTTCTCACC
LOC_Os02g30714
Os.49976.1.S1_at--937--4251Chr02:18302352..18302376 (25 bp)
CCTGGCTACGTCGAATCCGAGATTA
LOC_Os02g30714
Os.49976.1.S1_at--720--4071Chr02:18302363..18302387 (25 bp)
CGAATCCGAGATTACCAAGGGCAAG
LOC_Os02g30714
Os.49976.1.S1_at--158--6271Chr02:18302406..18302430 (25 bp)
GATGTCGCTGTCAACGAGGAAGCCA
LOC_Os02g30714
Os.49976.1.S1_at--467--5731Chr02:18303863..18303887 (25 bp)
GACTGGTACGTCACGTGGCCGTCGC
LOC_Os02g30714
Os.49976.1.S1_at--519--5151Chr02:18304047..18304071 (25 bp)
GCAACCCAGCCATCAAGACAGAGGA
LOC_Os02g30714
Os.49976.1.S1_at--752--1871Chr02:18304071..18304095 (25 bp)
ACGAGGAATATTGCGACGGCGAAGA
LOC_Os02g30714
Os.49976.1.S1_at--1023--4691Chr02:18304124..18304148 (25 bp)
GCGGCGTACCTACTGCAATGCAGGA
LOC_Os02g30714
Os.49976.1.S1_at--186--2891Chr02:18304148..18304172 (25 bp)
AAGGGTTTGCGAGCCGCACATACGT
LOC_Os02g30714
Os.49976.1.S1_at--794--1871Chr02:18304177..18304201 (25 bp)
ACGTTGCATTTTTAGCCTTTCGGAT
LOC_Os02g30714
Os.49976.1.S1_at--714--9971Chr02:18304189..18304213 (25 bp)
TAGCCTTTCGGATTCAATCCTGTAA
LOC_Os02g30714
Target Sequence 
GGAGGTCGGGATCACAGTTCTCACCCCTGGCTACGTCGAATCCGAGATTACCAAGGGCAAGGGCATCCAGAGCGGCGGCG
ATGTCGCTGTCAACGAGGAAGCCAGAGATGAGCAGATCGGCGTGTTCCCGGTGGGCCGCGTGGCGGAGCTGGGCGAGGTG
GCCATGGACGGCATCCGGGCCGGCGACTGGTACGTCACGTGGCCGTCGCTGTTCCGGCCGCTGCAGCTGGTAGCCTGCCT
CGCCCCCGGGGTGCTGGACTGGGCCTGCCGCGCGCTGTACGGCACCAGGAAGGGGGCACGACCGCCGCTCGGGAAGAGGA
TCATGGAGGCCACCGGCATGAAGCGCCTCTTCCCGGAGGCTCTCCGCCGCAACCCAGCCATCAAGACAGAGGACGAGGAA
TATTGCGACGGCGAAGAAGGCTACGGCGCCGCTGACGATGCCGCCGCGGCGTACCTACTGCAATGCAGGAAGGGTTTGCG
AGCCGCACATACGTACATACGTTGCATTTTTAGCCTTTCGGATTCAATCCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis