Browse Element(s) Details


Os.10257.1.S1_x_at

Description gb:AK105023.2
DB_XREF= gi:42821638
TID=Os.10257.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H05, full insert sequence.
FL= gb:AK105023.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3073011/11SART-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30690OsAffx.24515.1.S1_at11/112+18279457..18280842oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g30700OsAffx.2811.1.S1_at9/112+18284243..18286689Myb-like DNA-binding domain containing protein
LOC_Os02g30714Os.49976.1.S1_at11/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.52574.2.S1_x_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.26986.1.A1_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30730Os.10257.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730OsAffx.2812.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730Os.10257.1.S1_x_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30740NANA2+18314279..18317392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30750NANA2+18318959..18320395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30760NANA2+18321327..18321536hypothetical protein
LOC_Os02g30770Os.47463.1.S1_x_at4/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30770Os.14491.2.S1_x_at3/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30780Os.18404.1.S1_at11/112+18329028..18329917LGC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003676molecular_functionnucleic acid binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10257.1.S1_x_at--295--411Chr02:18306691..18306710 (20 bp)
ATCAGGTCAAACGAGCGATGCCAGT
LOC_Os02g30730
Os.10257.1.S1_x_at--754--6351Chr02:18306675..18306699 (25 bp)
GATGCCAGTGGCTTTGCTACAGTGG
LOC_Os02g30730
Os.10257.1.S1_x_at--10--4891Chr02:18306452..18306476 (25 bp)
GCATCAAACGAAGCGCCCAGGGTGG
LOC_Os02g30730
Os.10257.1.S1_x_at--839--5431Chr02:18306389..18306413 (25 bp)
GAACCTGCAGTGGACTTGGCTGAGT
LOC_Os02g30730
Os.10257.1.S1_x_at--208--10871Chr02:18306325..18306349 (25 bp)
TTGGAGCAGATTTCGAGGGACCTAC
LOC_Os02g30730
Os.10257.1.S1_x_at--680--1071Chr02:18306310..18306334 (25 bp)
AGGGACCTACACCAGCAGATACCAA
LOC_Os02g30730
Os.10257.1.S1_x_at--568--1251Chr02:18306294..18306318 (25 bp)
AGATACCAACGACCCATGAAGCAGC
LOC_Os02g30730
Os.10257.1.S1_x_at--322--5391Chr02:18306277..18306301 (25 bp)
GAAGCAGCCCCAAATGAGTTAACAT
LOC_Os02g30730
Os.10257.1.S1_x_at--1030--5431Chr02:18306248..18306272 (25 bp)
GAACCTGTGAATTTTTATTCCAAGT
LOC_Os02g30730
Os.10257.1.S1_x_at--952--731Chr02:18306218..18306242 (25 bp)
ATGTTAACATTCTGACATGGGCGAT
LOC_Os02g30730
Os.10257.1.S1_x_at--142--8371Chr02:18306199..18306223 (25 bp)
GGCGATGTAACTTTTGTAACCAGCT
LOC_Os02g30730
Target Sequence 
ATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGG
CCAAAAAGGTCGAGCACTTTNTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCA
AAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGNTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAG
ATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAAT
TTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10257.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis