Browse Element(s) Details


OsAffx.24515.1.S1_at

Description tigr:9630.m02942
TID=OsAffx.24515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, short chain dehydrogenasereductase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3069011/11oxidoreductase, short chain dehydrogenase/reductase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30660OsAffx.24513.1.S1_at11/112+18266470..18266694hypothetical protein
LOC_Os02g30670Os.20069.2.S1_at1/112+18271782..18272532hypothetical protein
LOC_Os02g30680Os.38395.4.S1_x_at9/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.5.S1_at5/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.2.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30680Os.38395.3.S1_x_at2/112+18272865..18277102transposon protein, putative, Mutator sub-class
LOC_Os02g30690OsAffx.24515.1.S1_at11/112+18279457..18280842oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g30700OsAffx.2811.1.S1_at9/112+18284243..18286689Myb-like DNA-binding domain containing protein
LOC_Os02g30714Os.49976.1.S1_at11/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.52574.2.S1_x_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.26986.1.A1_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30730Os.10257.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730OsAffx.2812.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730Os.10257.1.S1_x_at11/112+18305663..18311428SART-1 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24515.1.S1_at--421--2571Chr02:18280080..18280104 (25 bp)
AACGGTGGCCACCTCAAGGATGAGC
LOC_Os02g30690
OsAffx.24515.1.S1_at--1039--2591Chr02:18280242..18280263 (22 bp)
AACGCGTCCAAAGCGGCGGTGCTGA
LOC_Os02g30690
OsAffx.24515.1.S1_at--266--3871Chr02:18280260..18280284 (25 bp)
CTGAGGTTCTACGAGACGCTGAGAG
LOC_Os02g30690
OsAffx.24515.1.S1_at--642--9431Chr02:18280291..18280315 (25 bp)
TCGGCTCGGAGGTCGGCGTCACCAT
LOC_Os02g30690
OsAffx.24515.1.S1_at--793--4851Chr02:18280327..18280351 (25 bp)
GCTACGTCGAGTCCGAGATGACCAT
LOC_Os02g30690
OsAffx.24515.1.S1_at--174--811Chr02:18280350..18280374 (25 bp)
ATGGGCAAGGCCGTCCAGAAAGACG
LOC_Os02g30690
OsAffx.24515.1.S1_at--432--4011Chr02:18280361..18280385 (25 bp)
CGTCCAGAAAGACGGCGTGCTCGTC
LOC_Os02g30690
OsAffx.24515.1.S1_at--434--9411Chr02:18280381..18280405 (25 bp)
TCGTCGTCGACCAGGAGGCCAGAGA
LOC_Os02g30690
OsAffx.24515.1.S1_at--714--4231Chr02:18280652..18280676 (25 bp)
CCGAGATCGTGAGCTGGCTGTCCTA
LOC_Os02g30690
OsAffx.24515.1.S1_at--784--4711Chr02:18280664..18280688 (25 bp)
GCTGGCTGTCCTACGCGATGTACAA
LOC_Os02g30690
OsAffx.24515.1.S1_at--346--4631Chr02:18280678..18280702 (25 bp)
GCGATGTACAACACCAAGGCGGGAG
LOC_Os02g30690
Target Sequence 
AACGGTGGCCACCTCAAGGATGAGCTTCTACAACGCGTCCAAAGCGGCGGTGCTGAGGTTCTACGAGACGCTGAGAGCGG
AGCTCGGCTCGGAGGTCGGCGTCACCATCCTCACCCACGGCTACGTCGAGTCCGAGATGACCATGGGCAAGGCCGTCCAG
AAAGACGGCGTGCTCGTCGTCGACCAGGAGGCCAGAGACGTGCAGATCGGGGTGTTCCCGGTGGGCGGCGTGGGCGCCAT
GTGCCGGGTCGCCATGGACGGCATCCGGAGGGGCGACCGGTACGTGACGTGGCCGTCCGTGTACCGGCCGCTGCAGCTGG
TCGCGTGCCTCGCGCCCGAGATCGTGAGCTGGCTGTCCTACGCGATGTACAACACCAAGGCGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis