Browse Element(s) Details


Os.18404.1.S1_at

Description gb:AK111241.1
DB_XREF= gi:32996450
TID=Os.18404.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-C12, full insert sequence.
FL= gb:AK111241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3078011/11LGC1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30714Os.49976.1.S1_at11/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.52574.2.S1_x_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30714Os.26986.1.A1_at1/112+18290386..18304264oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g30730Os.10257.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730OsAffx.2812.1.S1_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30730Os.10257.1.S1_x_at11/112+18305663..18311428SART-1 family protein, expressed
LOC_Os02g30740NANA2+18314279..18317392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30750NANA2+18318959..18320395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30760NANA2+18321327..18321536hypothetical protein
LOC_Os02g30770Os.47463.1.S1_x_at4/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30770Os.14491.2.S1_x_at3/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30780Os.18404.1.S1_at11/112+18329028..18329917LGC1, putative, expressed
LOC_Os02g30790Os.52903.1.S1_at11/112+18337705..18341212expressed protein
LOC_Os02g30800OsAffx.12295.1.S1_at10/112+18343019..18365090DNA polymerase family B, exonuclease domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18404.1.S1_at--1004--7051Chr02:18329660..18329684 (25 bp)
GTAAGCTCGCAGGTCCACTGCTAGT
LOC_Os02g30780
Os.18404.1.S1_at--970--1031Chr02:18329670..18329694 (25 bp)
AGGTCCACTGCTAGTGCTTAGCTAG
LOC_Os02g30780
Os.18404.1.S1_at--213--10011Chr02:18329688..18329712 (25 bp)
TAGCTAGCCTAGCAAGCACTGTCAC
LOC_Os02g30780
Os.18404.1.S1_at--271--3771Chr02:18329716..18329740 (25 bp)
CTCTATCATCAGCTCGTCGTCAAAA
LOC_Os02g30780
Os.18404.1.S1_at--128--9491Chr02:18329724..18329748 (25 bp)
TCAGCTCGTCGTCAAAACGGCAGAA
LOC_Os02g30780
Os.18404.1.S1_at--887--5211Chr02:18329757..18329781 (25 bp)
GAATTAGCTAGTGCAGAGTGTATCA
LOC_Os02g30780
Os.18404.1.S1_at--787--6111Chr02:18329772..18329796 (25 bp)
GAGTGTATCATATGTAAACCCCAGT
LOC_Os02g30780
Os.18404.1.S1_at--867--9831Chr02:18329786..18329810 (25 bp)
TAAACCCCAGTACTGCACCGTGTTA
LOC_Os02g30780
Os.18404.1.S1_at--1093--9911Chr02:18329796..18329820 (25 bp)
TACTGCACCGTGTTAGTGCTGGGTA
LOC_Os02g30780
Os.18404.1.S1_at--156--7311Chr02:18329811..18329835 (25 bp)
GTGCTGGGTAATTTCAAACTTCTGA
LOC_Os02g30780
Os.18404.1.S1_at--1070--1491Chr02:18329877..18329901 (25 bp)
AGCACCCTCCAGAACTGTTTGTGAT
LOC_Os02g30780
Target Sequence 
GTAAGCTCGCAGGTCCACTGCTAGTGCTTAGCTAGCCTAGCAAGCACTGTCACCCACTCTATCATCAGCTCGTCGTCAAA
ACGGCAGAAGCGAAAATGAATTAGCTAGTGCAGAGTGTATCATATGTAAACCCCAGTACTGCACCGTGTTAGTGCTGGGT
AATTTCAAACTTCTGATATTGTTTTTGGTTTTGGAAAAAAGAAGGGGGAAGCAGTGGAGCACCCTCCAGAACTGTTTGTG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis