Browse Element(s) Details


Os.52903.1.S1_at

Description gb:AK069817.1
DB_XREF= gi:32979841
TID=Os.52903.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031E21, full insert sequence.
FL= gb:AK069817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3079011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30740NANA2+18314279..18317392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30750NANA2+18318959..18320395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30760NANA2+18321327..18321536hypothetical protein
LOC_Os02g30770Os.47463.1.S1_x_at4/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30770Os.14491.2.S1_x_at3/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30780Os.18404.1.S1_at11/112+18329028..18329917LGC1, putative, expressed
LOC_Os02g30790Os.52903.1.S1_at11/112+18337705..18341212expressed protein
LOC_Os02g30800OsAffx.12295.1.S1_at10/112+18343019..18365090DNA polymerase family B, exonuclease domain containing protein, expressed
LOC_Os02g30810Os.7633.1.S1_at11/112+18365577..18367000Auxin responsive protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52903.1.S1_at--583--6491Chr02:18338363..18338387 (25 bp)
GATAGCATCTTACCCTAGAAGGGAA
LOC_Os02g30790
Os.52903.1.S1_at--8--6291Chr02:18338230..18338254 (25 bp)
GATGTTTTCACCAGATGTGCTATCT
LOC_Os02g30790
Os.52903.1.S1_at--693--8591Chr02:18338215..18338239 (25 bp)
TGTGCTATCTAAGCTGGTAACTGAT
LOC_Os02g30790
Os.52903.1.S1_at--657--2351Chr02:18338098..18338122 (25 bp)
AAAGCTCTTGGCCACCTTGATAGGG
LOC_Os02g30790
Os.52903.1.S1_at--922--5851Chr02:18338018..18338042 (25 bp)
GACCACAGGTATTCTGAAGCTGCTA
LOC_Os02g30790
Os.52903.1.S1_at--105--5411Chr02:18338003..18338027 (25 bp)
GAAGCTGCTATCTATGCCCAAGATG
LOC_Os02g30790
Os.52903.1.S1_at--674--651Chr02:18337981..18338005 (25 bp)
ATGACTTCCAGTGATTTCCAGACCA
LOC_Os02g30790
Os.52903.1.S1_at--660--1371Chr02:18337962..18337986 (25 bp)
AGACCACCACTTCTTTTGTGTTTTG
LOC_Os02g30790
Os.52903.1.S1_at--337--411Chr02:18337902..18337926 (25 bp)
ATCAGTGTACTGTTTGGTTTCTACT
LOC_Os02g30790
Os.52903.1.S1_at--745--7011Chr02:18337756..18337780 (25 bp)
GTACTAGCTGAAGCGCACAATGCCG
LOC_Os02g30790
Os.52903.1.S1_at--638--4151Chr02:18337733..18337757 (25 bp)
CGCGCTGCCCGGATCAATTGAAGTC
LOC_Os02g30790
Target Sequence 
GATAGCATCTTACCCTAGAAGGGAAGTTATAGAATACAGTCAAAAGATGTTTTCACCAGATGTGCTATCTAAGCTGGTAA
CTGATGCACCAAAATATGGCATTTGGATAAAAAAGCGCACTTCCAAGAGAATCCATGAAGAAATGGTATTTTTGTATCAA
CAAAGGATTGAAAAGCGAAAGCTCTTGGCCACCTTGATAGGGGAGGCTACAAAGGTTTATGAAGCTGAACAAGCGGAATT
GCTGACAAACTAGAAGTGACCACAGGTATTCTGAAGCTGCTATCTATGCCCAAGATGACTTCCAGTGATTTCCAGACCAC
CACTTCTTTTGTGTTTTGTTTATCTCAAGTTAAATTTGGGAATTACTGATATGATCAGTGTACTGTTTGGTTTCTACTTT
AGACAAGTTAGACTGTGCTTCTCCAAGCTGCTATTTGTTTTGGTTTTGGTAGTATTGGTTTCTACTTTAGACAAGTCAGA
CTGTGTTTCTCCAAGCTGCTATTTGTTTTGGTTTTGGTAGTACTAGCTGAAGCGCACAATGCCGCGCTGCCCGGATCAAT
TGAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis