Browse Element(s) Details


OsAffx.12295.1.S1_at

Description tigr:9630.m02953
TID=OsAffx.12295.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA polymerase family B, exonuclease domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3080010/11DNA polymerase family B, exonuclease domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30750NANA2+18318959..18320395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30760NANA2+18321327..18321536hypothetical protein
LOC_Os02g30770Os.47463.1.S1_x_at4/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30770Os.14491.2.S1_x_at3/112+18323290..18326043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30780Os.18404.1.S1_at11/112+18329028..18329917LGC1, putative, expressed
LOC_Os02g30790Os.52903.1.S1_at11/112+18337705..18341212expressed protein
LOC_Os02g30800OsAffx.12295.1.S1_at10/112+18343019..18365090DNA polymerase family B, exonuclease domain containing protein, expressed
LOC_Os02g30810Os.7633.1.S1_at11/112+18365577..18367000Auxin responsive protein, expressed
LOC_Os02g30820OsAffx.28031.1.S1_x_at2/112+18371649..18372751hypothetical protein
LOC_Os02g30830OsAffx.12297.1.S1_at11/112+18374877..18375260hypothetical protein
LOC_Os02g30840Os.53662.1.S1_at11/112+18379408..18384495RNA pseudouridylate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008622cellular_componentepsilon DNA polymerase complex
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12295.1.S1_at--675--2931Chr02:18362981..18363005 (25 bp)
AAGGCAAGTCCGAATCAGTTGAACT
LOC_Os02g30800
OsAffx.12295.1.S1_at--848--1431Chr02:18363015..18363039 (25 bp)
AGAACCTGATCCTCACACACATAAG
LOC_Os02g30800
OsAffx.12295.1.S1_at--289--3311Chr02:18363030..18363054 (25 bp)
CACACATAAGGGAGATGCTGCATTA
LOC_Os02g30800
OsAffx.12295.1.S1_at--329--4751Chr02:18363046..18363070 (25 bp)
GCTGCATTAGAGTTCATTAAGCATA
LOC_Os02g30800
OsAffx.12295.1.S1_at--6--4751Chr02:18363076..18363100 (25 bp)
GCTGTTCTTGCTCTTGATCAGAATG
LOC_Os02g30800
OsAffx.12295.1.S1_at--327--10031Chr02:18363432..18363456 (25 bp)
TAGTTCGTGTAAAGGAGTTTGCTCC
LOC_Os02g30800
OsAffx.12295.1.S1_at--1156--6831Chr02:18363448..18363472 (25 bp)
GTTTGCTCCAGAAGCACAGTTCCAA
LOC_Os02g30800
OsAffx.12295.1.S1_at--920--1231Chr02:18363465..18363489 (25 bp)
AGTTCCAAGATCCATGTGCCTCATT
LOC_Os02g30800
OsAffx.12295.1.S1_at--605--3771NONE
CTCTCCCCAATGTGATTTGCAGCTA
NONE
OsAffx.12295.1.S1_at--582--5051Chr02:18363952..18363976 (25 bp)
GCAGCTATTGCAATGATTGTCGGGA
LOC_Os02g30800
OsAffx.12295.1.S1_at--442--9031Chr02:18364073..18364133 (25 bp)
TGCACTTCTACAGGATTTGGTCTGC
LOC_Os02g30800
Target Sequence 
AAGGCAAGTCCGAATCAGTTGAACTTACAAACAGAGAACCTGATCCTCACACACATAAGGGAGATGCTGCATTAGAGTTC
ATTAAGCATATATGTGCTGTTCTTGCTCTTGATCAGAATGTTCAGCATGATATTCTGAGAATGAGGAAGAACTTGTTAAA
GTTAGTTCGTGTAAAGGAGTTTGCTCCAGAAGCACAGTTCCAAGATCCATGTGCCTCATTCACTCTCCCCAATGTGATTT
GCAGCTATTGCAATGATTGTCGGGATCTTGATCTCTGCCGTGATTCAACACTCCAAGGTCAGGAGTGGAGGTGTGCTGTG
CCGCAGTGCGGGCAGCCATACCATCGTGAACAGATGGAAAATGCACTTCTACAGGATTTGGTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis