Browse Element(s) Details


OsAffx.12297.1.S1_at

Description tigr:9630.m02957
TID=OsAffx.12297.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3083011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30800OsAffx.12295.1.S1_at10/112+18343019..18365090DNA polymerase family B, exonuclease domain containing protein, expressed
LOC_Os02g30810Os.7633.1.S1_at11/112+18365577..18367000Auxin responsive protein, expressed
LOC_Os02g30820OsAffx.28031.1.S1_x_at2/112+18371649..18372751hypothetical protein
LOC_Os02g30830OsAffx.12297.1.S1_at11/112+18374877..18375260hypothetical protein
LOC_Os02g30840Os.53662.1.S1_at11/112+18379408..18384495RNA pseudouridylate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12297.1.S1_at--988--1911Chr02:18375203..18375227 (25 bp)
ACGGGTGCAACATTGGGAGCTCTGT
LOC_Os02g30830
OsAffx.12297.1.S1_at--839--1571Chr02:18375054..18375210 (25 bp)
AGCTCTGTGGTGGCGGCCTCCAAAG
LOC_Os02g30830
OsAffx.12297.1.S1_at--394--9211Chr02:18375036..18375060 (25 bp)
TCCAAAGCTGGAGGGCCTTAGCGAC
LOC_Os02g30830
OsAffx.12297.1.S1_at--858--1071Chr02:18375025..18375049 (25 bp)
AGGGCCTTAGCGACAGCGATGACGA
LOC_Os02g30830
OsAffx.12297.1.S1_at--258--8571Chr02:18374997..18375021 (25 bp)
TGGATCCGAGCTCGGCGACAACAGA
LOC_Os02g30830
OsAffx.12297.1.S1_at--437--5911Chr02:18374990..18375014 (25 bp)
GAGCTCGGCGACAACAGATCCGACG
LOC_Os02g30830
OsAffx.12297.1.S1_at--917--2191Chr02:18374980..18375004 (25 bp)
ACAACAGATCCGACGGCGCCGGTCT
LOC_Os02g30830
OsAffx.12297.1.S1_at--979--6931Chr02:18374947..18374971 (25 bp)
GTAGATTTGCGAACGACGACCTTGG
LOC_Os02g30830
OsAffx.12297.1.S1_at--1162--10691Chr02:18374941..18374965 (25 bp)
TTGCGAACGACGACCTTGGGAGCTG
LOC_Os02g30830
OsAffx.12297.1.S1_at--74--7571Chr02:18374914..18374938 (25 bp)
GGGCCTCAGCACCAATGACAATGGC
LOC_Os02g30830
OsAffx.12297.1.S1_at--267--1511Chr02:18374907..18374931 (25 bp)
AGCACCAATGACAATGGCAGCGGAC
LOC_Os02g30830
Target Sequence 
ACGGGTGCAACATTGGGAGCTCTGTGGTGGCGGCCTCCAAAGCTGGAGGGCCTTAGCGACAGCGATGACGATGGTGGATC
CGAGCTCGGCGACAACAGATCCGACGGCGCCGGTCTCGATAGGGGTAGATTTGCGAACGACGACCTTGGGAGCTGTGGGG
CCTCAGCACCAATGACAATGGCAGCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis