Browse Element(s) Details


OsAffx.30874.1.S1_at

Description tigr:9639.m00756
TID=OsAffx.30874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0826011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08220Os.55322.1.S1_at11/1111+4310945..4311517expressed protein
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08240OsAffx.30875.1.S1_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08240OsAffx.30875.1.S1_x_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08250OsAffx.18743.1.S1_at11/1111+4323671..4324000hypothetical protein
LOC_Os11g08260OsAffx.30874.1.S1_at11/1111+4325990..4326472hypothetical protein
LOC_Os11g08270OsAffx.18742.1.S1_at9/1111+4330362..4333676hypothetical protein
LOC_Os11g08280OsAffx.30877.1.S1_at11/1111+4338379..4338717hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30874.1.S1_at--687--3331Chr11:4326039..4326063 (25 bp)
CACTGCTGCTGATGTGCCTGCTCTT
LOC_Os11g08260
OsAffx.30874.1.S1_at--743--9111Chr11:4326042..4326066 (25 bp)
TGCTGCTGATGTGCCTGCTCTTCGC
LOC_Os11g08260
OsAffx.30874.1.S1_at--821--9411Chr11:4326129..4326153 (25 bp)
TCGTCGAGCCGAGCGATGCGGACAC
LOC_Os11g08260
OsAffx.30874.1.S1_at--199--9371Chr11:4326132..4326156 (25 bp)
TCGAGCCGAGCGATGCGGACACGTA
LOC_Os11g08260
OsAffx.30874.1.S1_at--35--5871Chr11:4326134..4326158 (25 bp)
GAGCCGAGCGATGCGGACACGTACT
LOC_Os11g08260
OsAffx.30874.1.S1_at--687--4231Chr11:4326137..4326161 (25 bp)
CCGAGCGATGCGGACACGTACTCGA
LOC_Os11g08260
OsAffx.30874.1.S1_at--929--1631Chr11:4326140..4326164 (25 bp)
AGCGATGCGGACACGTACTCGACGT
LOC_Os11g08260
OsAffx.30874.1.S1_at--481--4051Chr11:4326142..4326166 (25 bp)
CGATGCGGACACGTACTCGACGTGC
LOC_Os11g08260
OsAffx.30874.1.S1_at--113--4071Chr11:4326169..4326193 (25 bp)
CGAGGCTGGAGGCTGCAACAACACC
LOC_Os11g08260
OsAffx.30874.1.S1_at--267--6211Chr11:4326170..4326194 (25 bp)
GAGGCTGGAGGCTGCAACAACACCG
LOC_Os11g08260
OsAffx.30874.1.S1_at--177--911Chr11:4326171..4326195 (25 bp)
AGGCTGGAGGCTGCAACAACACCGG
LOC_Os11g08260
Target Sequence 
CACTGCTGCTGATGTGCCTGCTCTTCGCCGCCACCGCCATGGCTGCATCGCCGTCGTCGTCGTCGTCGGCGGCGGCGGCG
GCGGCGAGCTTCGTCGAGCCGAGCGATGCGGACACGTACTCGACGTGCTTCGAGGCTGGAGGCTGCAACAACACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis