Browse Element(s) Details


OsAffx.30875.1.S1_at

Description tigr:9639.m00758
TID=OsAffx.30875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0824011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08210Os.4385.1.S1_at11/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_x_at10/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_at8/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08220Os.55322.1.S1_at11/1111+4310945..4311517expressed protein
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08240OsAffx.30875.1.S1_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08240OsAffx.30875.1.S1_x_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08250OsAffx.18743.1.S1_at11/1111+4323671..4324000hypothetical protein
LOC_Os11g08260OsAffx.30874.1.S1_at11/1111+4325990..4326472hypothetical protein
LOC_Os11g08270OsAffx.18742.1.S1_at9/1111+4330362..4333676hypothetical protein
LOC_Os11g08280OsAffx.30877.1.S1_at11/1111+4338379..4338717hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30875.1.S1_at--298--9171Chr11:4322001..4322025 (25 bp)
TGCCGCTGCTGATGTGCCTCTTCCT
LOC_Os11g08240
OsAffx.30875.1.S1_at--344--7731Chr11:4322065..4322089 (25 bp)
GGTGGCGAGCTCCCCACAGTACCAG
LOC_Os11g08240
OsAffx.30875.1.S1_at--624--2131Chr11:4322080..4322104 (25 bp)
ACAGTACCAGCCGAGCTATGGTAAT
LOC_Os11g08240
OsAffx.30875.1.S1_at--193--1711Chr11:4322085..4322109 (25 bp)
ACCAGCCGAGCTATGGTAATACGTA
LOC_Os11g08240
OsAffx.30875.1.S1_at--152--9371Chr11:4322121..4322145 (25 bp)
TCGAGGTTTCGGCATGCGATGACAC
LOC_Os11g08240
OsAffx.30875.1.S1_at--1098--4051Chr11:4322122..4322146 (25 bp)
CGAGGTTTCGGCATGCGATGACACC
LOC_Os11g08240
OsAffx.30875.1.S1_at--784--1011Chr11:4322124..4322148 (25 bp)
AGGTTTCGGCATGCGATGACACCGG
LOC_Os11g08240
OsAffx.30875.1.S1_at--994--4511Chr11:4322163..4322187 (25 bp)
GCCGCGACATGGGTCACAACCCTGC
LOC_Os11g08240
OsAffx.30875.1.S1_at--772--7091Chr11:4322175..4322199 (25 bp)
GTCACAACCCTGCTGGCTCAGCCTG
LOC_Os11g08240
OsAffx.30875.1.S1_at--221--9131Chr11:4322198..4322222 (25 bp)
TGCTGGACCAGCAACGTCGCGACCA
LOC_Os11g08240
OsAffx.30875.1.S1_at--887--8091Chr11:4322202..4322226 (25 bp)
GGACCAGCAACGTCGCGACCATCTT
LOC_Os11g08240
Target Sequence 
TGCCGCTGCTGATGTGCCTCTTCCTCGTCGCCGCCGCCGCCGCGGCTGCATCGTCGGAGACGGCGGTGGCGAGCTCCCCA
CAGTACCAGCCGAGCTATGGTAATACGTACTCGACGTGCTTCGAGGTTTCGGCATGCGATGACACCGGGTGCGCGATCAG
GTGCCGCGACATGGGTCACAACCCTGCTGGCTCAGCCTGCTGGACCAGCAACGTCGCGACCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis