Browse Element(s) Details


Os.55322.1.S1_at

Description gb:AK107866.1
DB_XREF= gi:32993075
TID=Os.55322.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-C02, full insert sequence.
FL= gb:AK107866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0822011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08190NANA11+4284877..4287163Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08200Os.50636.1.S1_s_at11/1111+4291064..4293357Aspartic proteinase Asp1 precursor, putative, expressed
LOC_Os11g08210Os.4385.1.S1_at11/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_x_at10/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_at8/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08220Os.55322.1.S1_at11/1111+4310945..4311517expressed protein
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08240OsAffx.30875.1.S1_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08240OsAffx.30875.1.S1_x_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08250OsAffx.18743.1.S1_at11/1111+4323671..4324000hypothetical protein
LOC_Os11g08260OsAffx.30874.1.S1_at11/1111+4325990..4326472hypothetical protein
LOC_Os11g08270OsAffx.18742.1.S1_at9/1111+4330362..4333676hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55322.1.S1_at--1049--2331Chr11:4311001..4311025 (25 bp)
AAAGCTAACACTAATCCGGACGATC
LOC_Os11g08220
Os.55322.1.S1_at--689--411Chr11:4311023..4311047 (25 bp)
ATCATGGCGATGCAGCGTTCAGGAC
LOC_Os11g08220
Os.55322.1.S1_at--300--971Chr11:4311043..4311067 (25 bp)
AGGACGCTCGAATATGGCTCTCTTC
LOC_Os11g08220
Os.55322.1.S1_at--936--2891Chr11:4311177..4311201 (25 bp)
AAGGTATTCTGTATGCCGGGTGCTT
LOC_Os11g08220
Os.55322.1.S1_at--114--8611Chr11:4311233..4311257 (25 bp)
TGGTGCCCGGCGAGGTGTATCTACT
LOC_Os11g08220
Os.55322.1.S1_at--606--7751Chr11:4311246..4311270 (25 bp)
GGTGTATCTACTTGGGTTTCAGCCC
LOC_Os11g08220
Os.55322.1.S1_at--141--2671Chr11:4311325..4311349 (25 bp)
AAGCCGTACATCCACAAACGCTGAT
LOC_Os11g08220
Os.55322.1.S1_at--597--8851Chr11:4311346..4311370 (25 bp)
TGATCCATCGACCAATGCTTGACGC
LOC_Os11g08220
Os.55322.1.S1_at--378--4931Chr11:4311362..4311386 (25 bp)
GCTTGACGCATGTATATCTCCGTGC
LOC_Os11g08220
Os.55322.1.S1_at--148--471Chr11:4311377..4311401 (25 bp)
ATCTCCGTGCTTGGGTTTACTATGC
LOC_Os11g08220
Os.55322.1.S1_at--250--3091Chr11:4311407..4311431 (25 bp)
AATAATTCAGACATGCGTGCTTGGT
LOC_Os11g08220
Target Sequence 
AAAGCTAACACTAATCCGGACGATCATGGCGATGCAGCGTTCAGGACGCTCGAATATGGCTCTCTTCTTCGTCGTCACCA
TCGTCGCCGCGCCGCTGCTGATGCATGATGATCTCCTCGCCGCGGCTGCGCAGGCAGCCGATGGCGGCGGCTCCGGCTCC
GGCCAGATGCAGCCGGAAGGTATTCTGTATGCCGGGTGCTTCAGGGCCGGCGGCTGCAAGCTGACGCCGGAGTGGTGCCC
GGCGAGGTGTATCTACTTGGGTTTCAGCCCCGGCGCCGGCTGCGAGGTCATGGACGACGGCCACATCTACTGCTGCTGTG
GCCCAAGCCGTACATCCACAAACGCTGATCCATCGACCAATGCTTGACGCATGTATATCTCCGTGCTTGGGTTTACTATG
CTGATTAATAATTCAGACATGCGTGCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis