Browse Element(s) Details


Os.50636.1.S1_s_at

Description gb:AF308692.1
DB_XREF= gi:33340112
GEN=OSAP1
TID=Os.50636.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50636 (NCBI UniGene Cluster)
DEF=Oryza sativa nucellin-like protein (OSAP1) mRNA, complete cds.
PROD=nucellin-like protein
FL= gb:AK110811.1 gb:AF308692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0820011/11Aspartic proteinase Asp1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08140OsAffx.8847.1.S1_x_at1/1111+4268050..4269289retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08140OsAffx.8338.1.S1_x_at1/1111+4268050..4269289retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.3.S1_x_at4/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_at2/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_x_at1/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08160Os.11510.1.S1_s_at1/1111+4278565..4279021transposon protein, putative, unclassified
LOC_Os11g08170OsAffx.18745.1.S1_at11/1111+4281044..4281400hypothetical protein
LOC_Os11g08180OsAffx.18744.1.S1_x_at10/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08180OsAffx.18744.1.S1_at10/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08180OsAffx.14069.1.S1_at1/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08190NANA11+4284877..4287163Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08200Os.50636.1.S1_s_at11/1111+4291064..4293357Aspartic proteinase Asp1 precursor, putative, expressed
LOC_Os11g08210Os.4385.1.S1_at11/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_x_at10/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_at8/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08220Os.55322.1.S1_at11/1111+4310945..4311517expressed protein
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50636.1.S1_s_at--1089--491Chr11:4292698..4292722 (25 bp)
ATCGGGCTCTTACTGTATGCTGGAA
LOC_Os11g08200
Os.50636.1.S1_s_at--234--5331Chr11:4292759..4292783 (25 bp)
GAAGTGCTTCAGATCACTGTCTCTG
LOC_Os11g08200
Os.50636.1.S1_s_at--1152--4491Chr11:4292790..4292814 (25 bp)
GCCGATGGCGATAAGAAGGCCACTT
LOC_Os11g08200
Os.50636.1.S1_s_at--301--1471Chr11:4292803..4292827 (25 bp)
AGAAGGCCACTTTGGAGATCCCACC
LOC_Os11g08200
Os.50636.1.S1_s_at--104--1511Chr11:4292830..4292950 (25 bp)
AGCACTACCTCATTATCTCTCAAGA
LOC_Os11g08200
Os.50636.1.S1_s_at--890--7191Chr11:4292996..4293020 (25 bp)
GTCGTTAGCTGGAACAAACTTAATT
LOC_Os11g08200
Os.50636.1.S1_s_at--872--7131Chr11:4293132..4293156 (25 bp)
GTCATATATGACAGCGAGAGATCGC
LOC_Os11g08200
Os.50636.1.S1_s_at--202--1351Chr11:4293148..4293172 (25 bp)
AGAGATCGCTGCTCGGATGGGTCAA
LOC_Os11g08200
Os.50636.1.S1_s_at--1020--3951Chr11:4293161..4293185 (25 bp)
CGGATGGGTCAATTATCAGTGCGAT
LOC_Os11g08200
Os.50636.1.S1_s_at--984--391Chr11:4293175..4293199 (25 bp)
ATCAGTGCGATAGAATTCCCCGTTC
LOC_Os11g08200
Os.50636.1.S1_s_at--437--9491Chr11:4293204..4293228 (25 bp)
TCTGCGATCACTTCGCGTCTCTGAA
LOC_Os11g08200
Target Sequence 
ATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAAATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTG
TCTCTGGAATTCGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGG
CCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAA
TGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGT
TCTGAGTCTGCGATCACTTCGCGTCTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50636.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis