Browse Element(s) Details


Os.11510.1.S1_s_at

Description gb:AY056828.1
DB_XREF= gi:16303739
TID=Os.11510.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11510 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-glucosidase isozyme 2 precursor, mRNA, complete cds.
PROD=beta-glucosidase isozyme 2 precursor
FL= gb:AY056828.1 gb:AK104707.1 gb:AK066710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3143011/11Glycosyl hydrolase family 1 protein, expressed
LOC_Os11g081601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31400Os.18923.2.S1_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.18923.1.S1_a_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.19627.1.S1_a_at1/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31410OsAffx.17976.1.S1_at11/119+18888723..18892801Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31420OsAffx.17977.1.S1_at11/119+18901783..18902564hypothetical protein
LOC_Os09g31430Os.11510.1.S1_s_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31430Os.11510.1.S1_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31434OsAffx.30110.1.S1_at11/119+18916298..18917041hypothetical protein
LOC_Os09g31438OsAffx.2442.1.S1_x_at1/119+18917534..18920656SBP-domain protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11510.1.S1_s_at--536--2211Chr09:18905067..18905091 (25 bp)
ACAACCCGACCATCTATGTTACAGA
LOC_Os09g31430
Os.11510.1.S1_s_at--653--691Chr09:18904861..18904885 (25 bp)
ATGAGGGTAACAACAGCACACTGCC
LOC_Os09g31430
Os.11510.1.S1_s_at--317--5131Chr09:18904846..18904870 (25 bp)
GCACACTGCCAGAGGCGCTCAAGGA
LOC_Os09g31430
Os.11510.1.S1_s_at--351--8011Chr09:18904824..18904848 (25 bp)
GGATGGACACAGGATCGAGTTCCAC
LOC_Os09g31430
Os.11510.1.S1_s_at--906--3331Chr09:18904737..18904761 (25 bp)
CACGTGGACATTCATGGACTGCTTT
LOC_Os09g31430
Os.11510.1.S1_s_at--1006--7351Chr09:18904705..18904729 (25 bp)
GTGACGGCTACCTTGACAGGTTCGG
LOC_Os09g31430
Os.11510.1.S1_s_at--968--6372Chr11:4278991..4279010 (20 bp)
GATCGAAGACTTCCTCAAGAGGCAC
LOC_Os11g08160
Os.11510.1.S1_s_at--459--8931Chr09:18904481..18904505 (25 bp)
TGACCGATATGATGGCGTGATGAAT
LOC_Os09g31430
Os.11510.1.S1_s_at--786--8751Chr09:18904434..18904458 (25 bp)
TGTACCTCAGTACCTGTGCATCATT
LOC_Os09g31430
Os.11510.1.S1_s_at--238--4751Chr09:18904405..18904429 (25 bp)
GCTGATCCCATTGAGCCGGACAATA
LOC_Os09g31430
Os.11510.1.S1_s_at--460--9771Chr09:18904366..18904390 (25 bp)
TAATGCTCCCTGTCGAGCAGTGTTG
LOC_Os09g31430
Target Sequence 
ACAACCCGACCATCTATGTTACAGAAAACGGCATCGATGAGGGTAACAACAGCACACTGCCAGAGGCGCTCAAGGATGGA
CACAGGATCGAGTTCCACTCAAAGCACCTGCAGTTCGTCAACCACGCCATCAAGAATGGGGTGAACGTGAAGGGCTACTT
CACGTGGACATTCATGGACTGCTTTGAGTGGGGTGACGGCTACCTTGACAGGTTCGGCCTCATCTACGTCGACCGCAAGA
CGCTCAAGCGCTACCGCAAGGAGTCCAGCTACTGGATCGAAGACTTCCTCAAGAGGCACTGATCCAGCCCCACAAAATTT
CGGATTGATCACGAGATCGATCGGCTGGCCACCAGATTTGTGTTTCGTCAGTCTAGCTTTCAGCTGGTTAATTTGTGATT
TGTGCATCAGTGGTGATGACCGATATGATGGCGTGATGAATTATGCTGCATTACTATTGAATGTGTACCTCAGTACCTGT
GCATCATTGCTGGCTGATCCCATTGAGCCGGACAATAATAAGAAGAAACAATAATGCTCCCTGTCGAGCAGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11510.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis