Browse Element(s) Details


OsAffx.17977.1.S1_at

Description tigr:9637.m02786
TID=OsAffx.17977.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3142011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31400Os.18923.2.S1_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.18923.1.S1_a_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.19627.1.S1_a_at1/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31410OsAffx.17976.1.S1_at11/119+18888723..18892801Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31420OsAffx.17977.1.S1_at11/119+18901783..18902564hypothetical protein
LOC_Os09g31430Os.11510.1.S1_s_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31430Os.11510.1.S1_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31434OsAffx.30110.1.S1_at11/119+18916298..18917041hypothetical protein
LOC_Os09g31438OsAffx.2442.1.S1_x_at1/119+18917534..18920656SBP-domain protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17977.1.S1_at--31--4091Chr09:18902469..18902493 (25 bp)
CGACTTGTCCTCTGCCGGTGTGGCG
LOC_Os09g31420
OsAffx.17977.1.S1_at--33--7091Chr09:18902139..18902163 (25 bp)
GTCAAGGCAGCACCGCATGACACGG
LOC_Os09g31420
OsAffx.17977.1.S1_at--918--7251Chr09:18902109..18902133 (25 bp)
GTCCTCGCTGACTGGAACGCTGGTT
LOC_Os09g31420
OsAffx.17977.1.S1_at--728--3911Chr09:18902098..18902122 (25 bp)
CTGGAACGCTGGTTTCGGCGTCAGT
LOC_Os09g31420
OsAffx.17977.1.S1_at--827--1951Chr09:18902057..18902081 (25 bp)
ACTGGAGCATGGTAGCCTGTTCCGA
LOC_Os09g31420
OsAffx.17977.1.S1_at--797--9971Chr09:18902045..18902069 (25 bp)
TAGCCTGTTCCGAGGCCGGCCATAT
LOC_Os09g31420
OsAffx.17977.1.S1_at--764--1751Chr09:18901937..18901961 (25 bp)
ACCTCCGCGCGCTGAGACGAGGAGC
LOC_Os09g31420
OsAffx.17977.1.S1_at--92--8371Chr09:18901876..18901900 (25 bp)
GGCGTGGGCGCAGCTGTATTGCAGC
LOC_Os09g31420
OsAffx.17977.1.S1_at--874--9351Chr09:18901842..18901866 (25 bp)
TCGACCGGACCTAGTCGGGATAACG
LOC_Os09g31420
OsAffx.17977.1.S1_at--907--7191Chr09:18901829..18901853 (25 bp)
GTCGGGATAACGTGATGCGCCACCA
LOC_Os09g31420
OsAffx.17977.1.S1_at--500--7951Chr09:18901825..18901849 (25 bp)
GGATAACGTGATGCGCCACCAGGGC
LOC_Os09g31420
Target Sequence 
CGACTTGTCCTCTGCCGGTGTGGCGCCCACGCCGCCGGAGGTTCTTTCTTCCCCAGCCGCCGCCGGCGAAGCGGAGGCGT
TGCTGGCCGTCAAGGCAGCACCGCATGACACGGCCAACGTCCTCGCTGACTGGAACGCTGGTTTCGGCGTCAGTGACGGC
GGCCCGTGCAACTGGAGCATGGTAGCCTGTTCCGAGGCCGGCCATATGGACGGGAGCACCGGGATGCCGAGGTGGGCGTC
GGCGCGGTTCTTGGGCTACGACATCGATCTCTCCCACGCCGGCAGCGACGACCTCCGCGCGCTGAGACGAGGAGCGGGTG
ATGGTGTTCACGACGCGCCGGCGGCAAGGAGGGCGTGGGCGCAGCTGTATTGCAGCCGGGTCGGCTCGACCGGACCTAGT
CGGGATAACGTGATGCGCCACCAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis