Browse Element(s) Details


Os.18923.1.S1_a_at

Description gb:AK065473.1
DB_XREF= gi:32975491
TID=Os.18923.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021L24, full insert sequence.
FL= gb:AK065473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3140011/11ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31380OsAffx.30109.1.S1_at11/119+18862285..18866497transcription factor jumonji, putative, expressed
LOC_Os09g31390Os.53810.1.S1_at11/119+18867479..18876573bZIP transcription factor family protein, expressed
LOC_Os09g31400Os.18923.2.S1_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.18923.1.S1_a_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.19627.1.S1_a_at1/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31410OsAffx.17976.1.S1_at11/119+18888723..18892801Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31420OsAffx.17977.1.S1_at11/119+18901783..18902564hypothetical protein
LOC_Os09g31430Os.11510.1.S1_s_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31430Os.11510.1.S1_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18923.1.S1_a_at--637--251Chr09:18883307..18883331 (25 bp)
ATATGCCTAGTAGTTACCAGACCAT
LOC_Os09g31400
Os.18923.1.S1_a_at--1031--10031Chr09:18883297..18883321 (25 bp)
TAGTTACCAGACCATACCTCCTAAG
LOC_Os09g31400
Os.18923.1.S1_a_at--282--3251Chr09:18883272..18883296 (25 bp)
CAACCACTTCCACTATCTATCATGG
LOC_Os09g31400
Os.18923.1.S1_a_at--659--791Chr09:18883241..18883265 (25 bp)
ATGTGGTTCCCTTGGGTATCAGAAC
LOC_Os09g31400
Os.18923.1.S1_a_at--216--1431Chr09:18883221..18883245 (25 bp)
AGAACACCAGCTGACAACAGTCCTT
LOC_Os09g31400
Os.18923.1.S1_a_at--1156--5611Chr09:18883209..18883233 (25 bp)
GACAACAGTCCTTATAGTGATCAAA
LOC_Os09g31400
Os.18923.1.S1_a_at--637--7611Chr09:18883173..18883197 (25 bp)
GGGAATTCTACTTCTGTTCCTGGAG
LOC_Os09g31400
Os.18923.1.S1_a_at--566--10171Chr09:18883066..18883090 (25 bp)
TATCAGTATCAGTAGCCCAATCCCA
LOC_Os09g31400
Os.18923.1.S1_a_at--317--3031Chr09:18882895..18882919 (25 bp)
AATGCCTCCTTGCATTTGTTTCTGT
LOC_Os09g31400
Os.18923.1.S1_a_at--554--8671Chr09:18882873..18882897 (25 bp)
TGTCGCCCATTTTGTCAGTAGGATT
LOC_Os09g31400
Os.18923.1.S1_a_at--89--311Chr09:18882756..18882780 (25 bp)
ATACCTGACTTGCATTCTTTGGAAA
LOC_Os09g31400
Target Sequence 
ATATGCCTAGTAGTTACCAGACCATACCTCCTAAGCAACCACTTCCACTATCTATCATGGAGCATCATGTGGTTCCCTTG
GGTATCAGAACACCAGCTGACAACAGTCCTTATAGTGATCAAATAATTGGTAGTGGGAATTCTACTTCTGTTCCTGGAGA
TATGCAGCTCATTGATTACCTTTAGACTATATCAGTATCAGTAGCCCAATCCCAGATATTGATGATTTGCTGCTGCATGA
TGATGATNTAATGGAATACTTGGGAACATAACATAGGTTAGGCTCCAATGCCTCCTTGCATTTGTTTCTGTCGCCCATTT
TGTCAGTAGGATTACCATNGTAACTTGAGTATGGAAGGCTATACTTNTTATTTTNCCATCAAATATCAATCTTNTTAGNN
GATACCNTTTCTAGCATNNCAAATTATACCTGACTTGCATTCTTTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18923.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis