Browse Element(s) Details


Os.53810.1.S1_at

Description gb:AK100210.1
DB_XREF= gi:32985419
TID=Os.53810.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043A12, full insert sequence.
FL= gb:AK103174.1 gb:AK100210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3139011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31350OsAffx.17975.1.S1_at11/119+18844066..18846214expressed protein
LOC_Os09g31360Os.51234.1.S1_at11/119+18848920..18852298expressed protein
LOC_Os09g31370OsAffx.30108.1.S1_at11/119+18852003..18854584expressed protein
LOC_Os09g31380OsAffx.30109.1.S1_at11/119+18862285..18866497transcription factor jumonji, putative, expressed
LOC_Os09g31390Os.53810.1.S1_at11/119+18867479..18876573bZIP transcription factor family protein, expressed
LOC_Os09g31400Os.18923.2.S1_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.18923.1.S1_a_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.19627.1.S1_a_at1/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31410OsAffx.17976.1.S1_at11/119+18888723..18892801Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53810.1.S1_at--1127--10611Chr09:18870091..18870115 (25 bp)
TTCCAACGTCGCCAACTACATGGGC
LOC_Os09g31390
Os.53810.1.S1_at--739--4111Chr09:18867756..18867780 (25 bp)
CGCATGCAAACACCGTAGCTCTTAG
LOC_Os09g31390
Os.53810.1.S1_at--198--6971Chr09:18867742..18867766 (25 bp)
GTAGCTCTTAGCTAGCAGCTTAGAG
LOC_Os09g31390
Os.53810.1.S1_at--784--6011Chr09:18867683..18867707 (25 bp)
GAGAGGACGACGACTGTGAAACCCC
LOC_Os09g31390
Os.53810.1.S1_at--699--831Chr09:18867635..18867659 (25 bp)
ATGGATGAACCGATGTGTACTGTGT
LOC_Os09g31390
Os.53810.1.S1_at--12--7431Chr09:18867621..18867645 (25 bp)
GTGTACTGTGTTTGGGCATTAACCC
LOC_Os09g31390
Os.53810.1.S1_at--680--7591Chr09:18867608..18867632 (25 bp)
GGGCATTAACCCTTTGATGTAAACA
LOC_Os09g31390
Os.53810.1.S1_at--14--10111Chr09:18867580..18867604 (25 bp)
TAGGCGTGTTTGACTGCTTGGTCGA
LOC_Os09g31390
Os.53810.1.S1_at--821--6391Chr09:18867557..18867581 (25 bp)
GATCGATCGAGATCTCTGTCGATAG
LOC_Os09g31390
Os.53810.1.S1_at--141--9011Chr09:18867527..18867551 (25 bp)
TGAATTAGCGGATCTTACCTCAGCA
LOC_Os09g31390
Os.53810.1.S1_at--86--6331Chr09:18867484..18867508 (25 bp)
GATGCAGCTCAATCAAACTTTTTCC
LOC_Os09g31390
Target Sequence 
TTCCAACGTCGCCAACTACATGGGCCAGATGGCCGTCGCCATCAACAAGCTCTCCACCCTCGAGGGCTTCGTCCGCCAGG
CTGAGAACCTGAGGCAGCAGACGCTGCACCGGCTGCAGCAGGTGCTGACGACGAGGCAGATGGCGCGGTCGCTGCTCGCC
GTCTCCGACTACTTCCACCGCCTCCGCACCCTCAGCTCCCTCTGGGTCACCCGCCCCAGGCACCCGCCTCACGACCACCA
GCCGCCGCCGCACTCCGCCGCCCCCCACACCTGAGATCACCGCCGCCGGCAACGCATGCAAACACCGTAGCTCTTAGCTA
GCAGCTTAGAGATATCGAGAGATCAGAAATTAAGCGATCGATCGAGAGAGGACGACGACTGTGAAACCCCCCATGGAATG
GATGGATGGATGGATGGATGAACCGATGTGTACTGTGTTTGGGCATTAACCCTTTGATGTAAACAAAGTAGGCGTGTTTG
ACTGCTTGGTCGATCGATCGAGATCTCTGTCGATAGGATCTTGAATTAGCGGATCTTACCTCAGCANCTGGTTCATCAAG
TGTTGATGCAGCTCAATCAAACTTTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis