Browse Element(s) Details


Os.51234.1.S1_at

Description gb:AK062303.1
DB_XREF= gi:32972321
TID=Os.51234.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H11, full insert sequence.
FL= gb:AK062303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3136011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31310Os.51627.1.A1_at11/119+18824515..18825255acetyltransferase, GNAT family protein, expressed
LOC_Os09g31319OsAffx.8598.1.S1_at1/119+18831048..18832707NA
LOC_Os09g31330NANA9+18836405..18837157hypothetical protein
LOC_Os09g31340NANA9+18839526..18840120hypothetical protein
LOC_Os09g31350OsAffx.17975.1.S1_at11/119+18844066..18846214expressed protein
LOC_Os09g31360Os.51234.1.S1_at11/119+18848920..18852298expressed protein
LOC_Os09g31370OsAffx.30108.1.S1_at11/119+18852003..18854584expressed protein
LOC_Os09g31380OsAffx.30109.1.S1_at11/119+18862285..18866497transcription factor jumonji, putative, expressed
LOC_Os09g31390Os.53810.1.S1_at11/119+18867479..18876573bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51234.1.S1_at--618--5571Chr09:18851601..18851625 (25 bp)
GAAAGGATCATTCGCTCTCCGAAAC
LOC_Os09g31360
Os.51234.1.S1_at--1004--3711Chr09:18851643..18851667 (25 bp)
CTACCTCAAGTACCCTGGAATCTAA
LOC_Os09g31360
Os.51234.1.S1_at--647--6291Chr09:18851733..18851757 (25 bp)
GATGATCTTTCAGTGGGAACCAGCT
LOC_Os09g31360
Os.51234.1.S1_at--594--5431Chr09:18851749..18851773 (25 bp)
GAACCAGCTGGGTGTGATCCTTTCA
LOC_Os09g31360
Os.51234.1.S1_at--301--7471Chr09:18851760..18851784 (25 bp)
GTGTGATCCTTTCATGCTGCAAGCT
LOC_Os09g31360
Os.51234.1.S1_at--115--3591Chr09:18851808..18851832 (25 bp)
CATTTACATAGTTCTCTTGGGCAGT
LOC_Os09g31360
Os.51234.1.S1_at--86--7551Chr09:18851826..18851850 (25 bp)
GGGCAGTATGCTCAGTTTTGTTCCA
LOC_Os09g31360
Os.51234.1.S1_at--1137--5571Chr09:18851873..18851897 (25 bp)
GAAATGTCCAGAGCCTTACTAGGTT
LOC_Os09g31360
Os.51234.1.S1_at--852--1071Chr09:18851911..18851935 (25 bp)
AGGGCGAGGCTTTCATAACATCTGA
LOC_Os09g31360
Os.51234.1.S1_at--630--8391Chr09:18852034..18852058 (25 bp)
GGCCTGTTAAGTTACTCCCAAACAT
LOC_Os09g31360
Os.51234.1.S1_at--660--2451Chr09:18852066..18852090 (25 bp)
AACACTGACATTTCTGTACTTTGTA
LOC_Os09g31360
Target Sequence 
GAAAGGATCATTCGCTCTCCGAAACTTCCCCCACAATCTGAGCTACCTCAAGTACCCTGGAATCTAATTGAGAGCATTGA
ACCTAGAGTAGATGTTGATGAGGACTATGTGGGGGATTTGTCATTTCGGATTGATGATCTTTCAGTGGGAACCAGCTGGG
TGTGATCCTTTCATGCTGCAAGCTTCTAATGTGCATATGTATGTCTTCATTTACATAGTTCTCTTGGGCAGTATGCTCAG
TTTTGTTCCATTTAAGTGTAGAAGCCTGGCTAGAAATGTCCAGAGCCTTACTAGGTTTCTGGATATACCAAGGGCGAGGC
TTTCATAACATCTGAAACATTATGTTGTGATGCAATGTTTTTGTTGATCATAGCATACCATTGGAGGAATACATAAGCAT
TTCAATAATTATCTAAGGATTATCCCAATTATGGGCCTGTTAAGTTACTCCCAAACATATTGTTCAACACTGACATTTCT
GTACTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis