Browse Element(s) Details


OsAffx.17975.1.S1_at

Description tigr:9637.m02778
TID=OsAffx.17975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3135011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31310Os.51627.1.A1_at11/119+18824515..18825255acetyltransferase, GNAT family protein, expressed
LOC_Os09g31319OsAffx.8598.1.S1_at1/119+18831048..18832707NA
LOC_Os09g31330NANA9+18836405..18837157hypothetical protein
LOC_Os09g31340NANA9+18839526..18840120hypothetical protein
LOC_Os09g31350OsAffx.17975.1.S1_at11/119+18844066..18846214expressed protein
LOC_Os09g31360Os.51234.1.S1_at11/119+18848920..18852298expressed protein
LOC_Os09g31370OsAffx.30108.1.S1_at11/119+18852003..18854584expressed protein
LOC_Os09g31380OsAffx.30109.1.S1_at11/119+18862285..18866497transcription factor jumonji, putative, expressed
LOC_Os09g31390Os.53810.1.S1_at11/119+18867479..18876573bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17975.1.S1_at--797--8331Chr09:18845484..18845508 (25 bp)
GGCTGCAACTGCACATACATCTAGC
LOC_Os09g31350
OsAffx.17975.1.S1_at--161--451Chr09:18845502..18845523 (22 bp)
ATCTAGCACTGCTGATGCCAAGAGA
LOC_Os09g31350
OsAffx.17975.1.S1_at--874--2831Chr09:18845821..18845845 (25 bp)
AAGTACTAGCTGCTCTGAACTGCCA
LOC_Os09g31350
OsAffx.17975.1.S1_at--244--6511Chr09:18845870..18845894 (25 bp)
GATATGAGCAGCACTAGCCCATCAT
LOC_Os09g31350
OsAffx.17975.1.S1_at--352--4331Chr09:18845888..18845912 (25 bp)
CCATCATCATCGGATTCTGAGTCTC
LOC_Os09g31350
OsAffx.17975.1.S1_at--1040--10591Chr09:18845902..18845926 (25 bp)
TTCTGAGTCTCCTGTAGCACCAAGA
LOC_Os09g31350
OsAffx.17975.1.S1_at--903--6231Chr09:18845957..18845981 (25 bp)
GATGGCATTGCTGGAGACTCTGAAT
LOC_Os09g31350
OsAffx.17975.1.S1_at--746--1831Chr09:18845982..18846006 (25 bp)
ACAAGGGTAGTTCTAGATTCTCAAT
LOC_Os09g31350
OsAffx.17975.1.S1_at--213--2531Chr09:18846032..18846056 (25 bp)
AACTCATCAGCTGGCAAGCTTCGGT
LOC_Os09g31350
OsAffx.17975.1.S1_at--422--2671Chr09:18846047..18846071 (25 bp)
AAGCTTCGGTCGACTAGTCCATTAA
LOC_Os09g31350
OsAffx.17975.1.S1_at--809--5371Chr09:18846121..18846145 (25 bp)
GAAGCAACGTATATCCACCAATGGA
LOC_Os09g31350
Target Sequence 
GGCTGCAACTGCACATACATCTAGCACTGCTGATGCCAAGAGAATAGCAGAGCTGCAAGAAATTCTTAAAAGAAAAAACA
TGGTGATATCTAAACTGAAGAAGGACATGTCAGCTTTAAAGCAGATGGTTGTTGAATTAACAAGGGCTAAAAGAACATCT
TCTGTCAATTTAAGTACTAGCTGCTCTGAACTGCCAGTGATGTCAAGTAATGTTCTTTATGATATGAGCAGCACTAGCCC
ATCATCATCGGATTCTGAGTCTCCTGTAGCACCAAGAGAATACCTTGATGATCATCTTAAGGTTGATGATGGCATTGCTG
GAGACTCTGAATACAAGGGTAGTTCTAGATTCTCAATGGAAAGCGCATGTTTTCCCACAAAAAACTCATCAGCTGGCAAG
CTTCGGTCGACTAGTCCATTAAAAGAGAACCGTATAGATCCGAATGTTGAAACAAGTTTGGTCGGTAGACAGAAGCAACG
TATATCCACCAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis