Browse Element(s) Details


OsAffx.30109.1.S1_at

Description tigr:9637.m02781
TID=OsAffx.30109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY125538 AT3g20810MOE17_10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3138011/11transcription factor jumonji, putative, expressed
LOC_Os08g398101/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31340NANA9+18839526..18840120hypothetical protein
LOC_Os09g31350OsAffx.17975.1.S1_at11/119+18844066..18846214expressed protein
LOC_Os09g31360Os.51234.1.S1_at11/119+18848920..18852298expressed protein
LOC_Os09g31370OsAffx.30108.1.S1_at11/119+18852003..18854584expressed protein
LOC_Os09g31380OsAffx.30109.1.S1_at11/119+18862285..18866497transcription factor jumonji, putative, expressed
LOC_Os09g31390Os.53810.1.S1_at11/119+18867479..18876573bZIP transcription factor family protein, expressed
LOC_Os09g31400Os.18923.2.S1_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.18923.1.S1_a_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.19627.1.S1_a_at1/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31410OsAffx.17976.1.S1_at11/119+18888723..18892801Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30109.1.S1_at--866--6212Chr09:18865554..18865578 (25 bp)
GAGGCGATCATGCATTTCTTTGGAG
LOC_Os09g31380
OsAffx.30109.1.S1_at--581--8831Chr09:18865518..18865542 (25 bp)
TGATTACTTTTTACGCGAGTCCCCT
LOC_Os09g31380
OsAffx.30109.1.S1_at--813--4611Chr09:18865504..18865528 (25 bp)
GCGAGTCCCCTGTTATAATCAGTGG
LOC_Os09g31380
OsAffx.30109.1.S1_at--258--5391Chr09:18865480..18865504 (25 bp)
GAAGCATCGATCATTGGCCTGCAAG
LOC_Os09g31380
OsAffx.30109.1.S1_at--757--5011Chr09:18864392..18864416 (25 bp)
GCAGGAGCTAATCACTTTCTCTCAG
LOC_Os09g31380
OsAffx.30109.1.S1_at--126--1631Chr09:18864347..18864371 (25 bp)
AGCTGGCTGTCCTTCAAACTTGACA
LOC_Os09g31380
OsAffx.30109.1.S1_at--1076--2391Chr09:18864332..18864356 (25 bp)
AAACTTGACATATCTGGCTCAGCAT
LOC_Os09g31380
OsAffx.30109.1.S1_at--409--4831Chr09:18864317..18864340 (24 bp)
GCTCAGCATCCCTTGTTTGAACAGA
LOC_Os09g31380
OsAffx.30109.1.S1_at--586--631Chr09:18864144..18864168 (25 bp)
ATGCATGGTTTGGTCCACACGGGAC
LOC_Os09g31380
OsAffx.30109.1.S1_at--111--5311Chr09:18862375..18862664 (25 bp)
GAAGGAGTTCCCACGGATGTACATT
LOC_Os09g31380
OsAffx.30109.1.S1_at--261--8791Chr09:18862351..18862375 (25 bp)
TGTTACTTCCCCTGTTATGACTAAA
LOC_Os09g31380
Target Sequence 
GAGGCGATCATGCATTTCTTTGGAGGAATTTATATGTGATTACTTTTTACGCGAGTCCCCTGTTATAATCAGTGGAAGCA
TCGATCATTGGCCTGCAAGGACAAAGTGGAAAGACATCCAATACCTGAAGAAGATTGCTGGAGATCGAACTGTTCCTGTT
GAAGTTGGAAAAAATTATGTGTGCAGTGAGTGGAAGCAGGAGCTAATCACTTTCTCTCAGTTCCTTGAGAGGATGTGGTC
AGCTGGCTGTCCTTCAAACTTGACATATCTGGCTCAGCATCCCTTGTTTGAACAGATAAAAGAGCTCCATGAAGATATAA
TGGTTCCTGACTACTGTTATGCTGGTGGAGGGGAGCTTCAGTCACTTAATGCATGGTTTGGTCCACACGGGACAGTGACA
CCATTGCACCATGATCCACATCACAACATTTTAGCTCAGGTAGATCTTGACAACGTTGATCTGAAGGAGTTCCCACGGAT
GTACATTGTTACTTCCCCTGTTATGACTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis