Browse Element(s) Details


Os.19627.1.S1_a_at

Description gb:AK066480.1
DB_XREF= gi:32976498
TID=Os.19627.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative crp1 protein (OSJNBa0095J15.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070G23, full insert sequence.
FL= gb:AK066480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1017011/11pentatricopeptide, putative, expressed
LOC_Os09g314001/11ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10140OsAffx.18201.1.S1_at10/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_at2/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_x_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.1257.1.S1_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10149Os.55619.1.S1_at11/1110+5334899..5335998expressed protein
LOC_Os10g10160OsAffx.6631.1.S1_at11/1110+5336964..5340250hypothetical protein
LOC_Os10g10170Os.19627.1.S1_a_at11/1110+5343540..5351016pentatricopeptide, putative, expressed
LOC_Os10g10180Os.8014.2.S1_x_at11/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.8014.1.S1_at10/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_at6/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_x_at5/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10190Os.50827.1.S1_x_at11/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.46916.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.11220.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19627.1.S1_a_at--139--5971Chr10:5344420..5344444 (25 bp)
GAGAAGACACTTAAACTTGCTGGAA
LOC_Os10g10170
Os.19627.1.S1_a_at--829--6071Chr10:5344059..5344083 (25 bp)
GAGTCGGTCAAGCAGTTGGTTCCCT
LOC_Os10g10170
Os.19627.1.S1_a_at--664--3431Chr10:5344047..5344071 (25 bp)
CAGTTGGTTCCCTGCTGAGGAGATT
LOC_Os10g10170
Os.19627.1.S1_a_at--1094--371Chr10:5344018..5344042 (25 bp)
ATCAAATATCATGGCGAGGAGTCTC
LOC_Os10g10170
Os.19627.1.S1_a_at--1027--7951Chr10:5343981..5344005 (25 bp)
GGATCAACGGGCTTACTCTAAGAAG
LOC_Os10g10170
Os.19627.1.S1_a_at--691--5492Chr10:5343918..5343942 (25 bp)
GAACACCAGCTGACTTGCTTCCTCT
LOC_Os10g10170
Os.19627.1.S1_a_at--514--2371Chr10:5343845..5343869 (25 bp)
AAACCTTTCTCTTGAGTAATCCATG
LOC_Os10g10170
Os.19627.1.S1_a_at--365--7071Chr10:5343830..5343854 (25 bp)
GTAATCCATGATTGACCTTCCTTTC
LOC_Os10g10170
Os.19627.1.S1_a_at--2--5671Chr10:5343817..5343841 (25 bp)
GACCTTCCTTTCTCGTGGATCAATT
LOC_Os10g10170
Os.19627.1.S1_a_at--756--7951Chr10:5343801..5343825 (25 bp)
GGATCAATTTTTGCGTACCATCAAG
LOC_Os10g10170
Os.19627.1.S1_a_at--935--7031Chr10:5343588..5343612 (25 bp)
GTAACATGGTGCCAAGATCACATTG
LOC_Os10g10170
Target Sequence 
GAGAAGACACTTAAACTTGCTGGAAGAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCATGG
CGAGGAGTCTCATGGAAAAATGAGGATCAACGGGCTTACTCTAAGAAGGTGGTTCAATCCGAAATTGACGAGCACATCCT
CCACTGGAACACCAGCTGACTTGCTTCCTCTGCCGTCACGATTAGCCAAAGGAATTGCANATCAGCAGCGCAACATCAGA
AACCTTTCTCTTGAGTAATCCATGATTGACCTTCCTTTCTCGTGGATCAATTTTTGCGTACCATCAAGCAAGGGCAAGAG
AAAAATCTTAGAAACCNCCCAGAAAATAGTTCAGCTTGATAAAATATGTAAAGAGTTTCTTTGTTTACAGGAAATTTATA
TATCATACATAGACACTTGTGTGCATCAGATTGCACAAACGCATATCAGGATATAGATCTTCAGCTGCTTTTGCAGATGA
ATTTGTCTTCNANNNNGTAACATGGTGCCAAGATCACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19627.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis