Browse Element(s) Details


OsAffx.1257.1.S1_at

Description gb:NM_188610.1
DB_XREF= gi:34904303
TID=OsAffx.1257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g101401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10119NANA10+5300231..5300554NA
LOC_Os10g10130Os.23327.2.S1_a_at11/1110+5304095..5310653Calcium binding EGF domain containing protein, expressed
LOC_Os10g10130Os.9996.2.S1_at1/1110+5304095..5310653Calcium binding EGF domain containing protein, expressed
LOC_Os10g10140OsAffx.18201.1.S1_at10/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_at2/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_x_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.1257.1.S1_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10149Os.55619.1.S1_at11/1110+5334899..5335998expressed protein
LOC_Os10g10160OsAffx.6631.1.S1_at11/1110+5336964..5340250hypothetical protein
LOC_Os10g10170Os.19627.1.S1_a_at11/1110+5343540..5351016pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1257.1.S1_at--586--2331Chr01:7229574..7229598 (25 bp)
AAAGTTGTCATGTTACTACACGATG
NONE
OsAffx.1257.1.S1_at--1102--731Chr01:7229583..7229607 (25 bp)
ATGTTACTACACGATGACTGCTATG
NONE
OsAffx.1257.1.S1_at--959--1871Chr01:7229593..7229617 (25 bp)
ACGATGACTGCTATGTTACTGCGAA
NONE
OsAffx.1257.1.S1_at--320--10477Chr10:5326144..5326212 (25 bp)
TTACTGCGAAATTCCTGCGAGACGT
LOC_Os10g10140
OsAffx.1257.1.S1_at--1068--9131NONE
TGCGAGACGTGAACAACCAAGTGAT
NONE
OsAffx.1257.1.S1_at--1058--2191NONE
ACAACCAAGTGATATCCATCTCGAC
NONE
OsAffx.1257.1.S1_at--936--8091Chr01:7230295..7230319 (25 bp)
GGACGACCGTTTTTCAACACCTGCA
NONE
OsAffx.1257.1.S1_at--1081--10311Chr01:7230306..7230330 (25 bp)
TTTCAACACCTGCAAGATTCGACTG
NONE
OsAffx.1257.1.S1_at--920--5171Chr01:7230317..7230341 (25 bp)
GCAAGATTCGACTGATCATGTTCAT
NONE
OsAffx.1257.1.S1_at--814--411Chr01:7230331..7230355 (25 bp)
ATCATGTTCATATCGAGGCCCATCG
NONE
OsAffx.1257.1.S1_at--895--231Chr01:7230340..7230364 (25 bp)
ATATCGAGGCCCATCGTCCATCGAT
NONE
Target Sequence 
AAAGTTGTCATGTTACTACACGATGACTGCTATGTTACTGCGAAATTCCTGCGAGACGTGAACAACCAAGTGATATCCAT
CTCGACGATCGGCGACGGACGACCGTTTTTCAACACCTGCAAGATTCGACTGATCATGTTCATATCGAGGCCCATCGTCC
ATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis